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鞘翅目昆虫(鞘翅目,瓢虫科)卫星组分析。

Satellitome Analysis in the Ladybird Beetle (Coleoptera, Coccinellidae).

机构信息

Department of Experimental Biology, Genetic Area, University of Jaén, 23071 Jaén, Spain.

Department of Organismal Biology, Systematic Biology, Evolutionary Biology Centre, Uppsala University, SE-752 36 Uppsala, Sweden.

出版信息

Genes (Basel). 2020 Jul 13;11(7):783. doi: 10.3390/genes11070783.

Abstract

is one of the most commercialized ladybirds used for the biological control of aphid pest species in many economically important crops. This species is the first Coccinellidae whose satellitome has been studied by applying new sequencing technologies and bioinformatics tools. We found that 47% of the genome is composed of repeated sequences. We identified 30 satellite DNA (satDNA) families with a median intragenomic divergence of 5.75% and A+T content between 45.6% and 74.7%. This species shows satDNA families with highly variable sizes although the most common size is 100-200 bp. However, we highlight the existence of a satDNA family with a repeat unit of 2 kb, the largest repeat unit described in Coleoptera. PCR amplifications for fluorescence in situ hybridization (FISH) probe generation were performed for the four most abundant satDNA families. FISH with the most abundant satDNA family as a probe shows its pericentromeric location on all chromosomes. This location is coincident with the heterochromatin revealed by C-banding and DAPI staining, also analyzed in this work. Hybridization signals for other satDNA families were located only on certain bivalents and the X chromosome. These satDNAs could be very useful as chromosomal markers due to their reduced location.

摘要

异色瓢虫是用于许多重要经济作物中防治蚜虫的最商业化的瓢虫之一。该物种是第一个应用新测序技术和生物信息学工具研究其卫星体的瓢虫科昆虫。我们发现,基因组的 47%由重复序列组成。我们鉴定了 30 个卫星 DNA(satDNA)家族,其基因组内平均分化度为 5.75%,A+T 含量在 45.6%至 74.7%之间。尽管最常见的大小为 100-200bp,但该物种显示出具有高度可变大小的 satDNA 家族。然而,我们强调存在一个重复单元为 2kb 的 satDNA 家族,这是鞘翅目昆虫中描述的最大重复单元。为生成荧光原位杂交(FISH)探针进行了用于四个最丰富的 satDNA 家族的 PCR 扩增。用最丰富的 satDNA 家族作为探针进行 FISH 显示其在所有染色体的着丝粒区域定位。这一位置与 C-带和 DAPI 染色揭示的异染色质重合,本工作也对此进行了分析。其他 satDNA 家族的杂交信号仅位于某些二价体和 X 染色体上。由于这些 satDNA 定位的减少,它们可能非常有用作为染色体标记。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5d0b/7397073/e7103cec4f2f/genes-11-00783-g001.jpg

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