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本文引用的文献

1
An ensemble n-sub-epidemic modeling framework for short-term forecasting epidemic trajectories: Application to the COVID-19 pandemic in the USA.一种用于短期预测传染病轨迹的集成 n 亚流行模型框架:在美国 COVID-19 大流行中的应用。
PLoS Comput Biol. 2022 Oct 6;18(10):e1010602. doi: 10.1371/journal.pcbi.1010602. eCollection 2022 Oct.
2
Empirical Evaluation of Alternative Time-Series Models for COVID-19 Forecasting in Saudi Arabia.沙特阿拉伯COVID-19预测替代时间序列模型的实证评估
Int J Environ Res Public Health. 2021 Aug 16;18(16):8660. doi: 10.3390/ijerph18168660.
3
Predicting and forecasting the impact of local outbreaks of COVID-19: use of SEIR-D quantitative epidemiological modelling for healthcare demand and capacity.预测和预报 COVID-19 局部暴发的影响:使用 SEIR-D 定量流行病学模型预测医疗需求和能力。
Int J Epidemiol. 2021 Aug 30;50(4):1103-1113. doi: 10.1093/ije/dyab106.
4
Comparative study of machine learning methods for COVID-19 transmission forecasting.机器学习方法在 COVID-19 传播预测中的比较研究。
J Biomed Inform. 2021 Jun;118:103791. doi: 10.1016/j.jbi.2021.103791. Epub 2021 Apr 26.
5
Global short-term forecasting of COVID-19 cases.全球 COVID-19 病例短期预测。
Sci Rep. 2021 Apr 6;11(1):7555. doi: 10.1038/s41598-021-87230-x.
6
A review on COVID-19 forecasting models.关于新冠病毒疾病预测模型的综述。
Neural Comput Appl. 2021 Feb 4:1-11. doi: 10.1007/s00521-020-05626-8.
7
Modelling and predicting the spatio-temporal spread of cOVID-19 in Italy.建模并预测 COVID-19 在意大利的时空传播。
BMC Infect Dis. 2020 Sep 23;20(1):700. doi: 10.1186/s12879-020-05415-7.
8
Mathematical modeling and the transmission dynamics in predicting the Covid-19 - What next in combating the pandemic.数学建模与预测新冠疫情中的传播动力学——抗击疫情的下一步举措
Infect Dis Model. 2020 Jun 30;5:366-374. doi: 10.1016/j.idm.2020.06.002. eCollection 2020.
9
A novel sub-epidemic modeling framework for short-term forecasting epidemic waves.一种新的亚流行建模框架,用于短期预测疫情波。
BMC Med. 2019 Aug 22;17(1):164. doi: 10.1186/s12916-019-1406-6.
10
Modeling diurnal hormone profiles by hierarchical state space models.通过分层状态空间模型对昼夜激素谱进行建模。
Stat Med. 2015 Oct 30;34(24):3223-34. doi: 10.1002/sim.6579. Epub 2015 Jul 7.

动态分层状态空间预测。

Dynamic hierarchical state space forecasting.

机构信息

Department of Biostatistics and Health Data Science, Indiana University School of Medicine, Indianapolis, Indiana.

Department of Biostatistics, Epidemiology and Informatics, University of Pennsylvania, Philadelphia, Pennsylvania.

出版信息

Stat Med. 2024 Jun 15;43(13):2655-2671. doi: 10.1002/sim.10097. Epub 2024 May 1.

DOI:10.1002/sim.10097
PMID:38693595
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11168190/
Abstract

In this paper, we aim to both borrow information from existing units and incorporate the target unit's history data in time series forecasting. We consider a situation when we have time series data from multiple units that share similar patterns when aligned in terms of an internal time. The internal time is defined as an index according to evolving features of interest. When mapped back to the calendar time, these time series can span different time intervals that can include the future calendar time of the targeted unit, over which we can borrow the information from other units in forecasting the targeted unit. We first build a hierarchical state space model for the multiple time series data in terms of the internal time, where the shared components capture the similarities among different units while allowing for unit-specific deviations. A conditional state space model is then constructed to incorporate the information of existing units as the prior information in forecasting the targeted unit. By running the Kalman filtering based on the conditional state space model on the targeted unit, we incorporate both the information from the other units and the history of the targeted unit. The forecasts are then transformed from internal time back into calendar time for ease of interpretation. A simulation study is conducted to evaluate the finite sample performance. Forecasting state-level new COVID-19 cases in United States is used for illustration.

摘要

在本文中,我们旨在从现有单位中借鉴信息,并在时间序列预测中纳入目标单位的历史数据。我们考虑一种情况,即我们有来自多个单位的时间序列数据,这些数据在内部时间方面对齐时具有相似的模式。内部时间被定义为根据感兴趣的演变特征的索引。当映射回日历时间时,这些时间序列可以跨越不同的时间间隔,其中可能包括目标单位的未来日历时间,我们可以在预测目标单位时从其他单位借用这些时间序列的数据。我们首先根据内部时间为多个时间序列数据构建层次状态空间模型,其中共享分量捕获不同单位之间的相似性,同时允许单位特定的偏差。然后构建条件状态空间模型,将现有单位的信息作为预测目标单位的先验信息。通过基于条件状态空间模型对目标单位运行卡尔曼滤波,我们整合了其他单位的信息和目标单位的历史数据。然后,将预测从内部时间转换回日历时间,以便于解释。进行了模拟研究以评估有限样本性能。以美国州级新的 COVID-19 病例预测为例。