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杜仲生长调控因子的全基因组鉴定与表达分析

Genome-Wide Identification and Expression Analysis of Growth-Regulating Factors in Oliver (Du-Zhong).

作者信息

Wang Ruoruo, Zhu Ying, Zhao Degang

机构信息

Plant Conservation Technology Center, Guizhou Key Laboratory of Agricultural Biotechnology, Biotechnology Institute of Guizhou Province, Guizhou Academy of Agricultural Sciences, Guiyang 550006, China.

Ministry of Agriculture and Rural Affairs, Key Laboratory of Crop Genetic Resources and Germplasm Innovation in Karst Region, Guiyang 550006, China.

出版信息

Plants (Basel). 2024 Apr 24;13(9):1185. doi: 10.3390/plants13091185.

Abstract

The roots, stems, leaves, and seeds of contain a large amount of trans-polyisoprene (also known as Eu-rubber), which is considered to be an important laticiferous plant with valuable industrial applications. Eu-rubber used in industry is mainly extracted from leaves. Therefore, it is of great significance to identify genes related to regulating the leaf size of . Plant growth-regulating factors (GRFs) play important roles in regulating leaf size, and their functions are highly conserved across different plant species. However, there have been very limited reports on EuGRFs until now. In this study, eight canonical EuGRFs with both QLQ and WRC domains and two putative eul-miR396s were identified in the chromosome-level genome of . It is found that, unlike AtGRFs, all EuGRFs contain the miR396s binding site in the terminal of WRC domains. These were distributed on six chromosomes in the genome of . Collinearity analysis of the genome revealed that and exhibit collinear relationships with , suggesting that those three genes may have emerged via gene replication events. The collinear relationship between , , and showed that and had no collinear members in and rice. Almost all show a higher expression level in growing and developing tissues, and most promoters process phytohormone-response and stress-induced cis-elements. Moreover, we found the expression of was significantly induced by gibberellins (GA) in three hours, and the height of seedlings was significantly increased one week after GA treatment. The findings in this study provide potential candidate genes for further research and lay the foundation for further exploring the molecular mechanism underlying development in response to GA.

摘要

[植物名称]的根、茎、叶和种子含有大量反式聚异戊二烯(也称为杜仲橡胶),它被认为是一种具有重要工业应用价值的产胶植物。工业用杜仲橡胶主要从叶子中提取。因此,鉴定与调控[植物名称]叶片大小相关的基因具有重要意义。植物生长调节因子(GRFs)在调控叶片大小方面发挥着重要作用,并且它们的功能在不同植物物种中高度保守。然而,到目前为止关于杜仲GRFs的报道非常有限。在本研究中,在[植物名称]的染色体水平基因组中鉴定出了8个具有QLQ和WRC结构域的典型杜仲GRFs以及2个假定的杜仲miR396s。研究发现,与拟南芥GRFs不同,所有杜仲GRFs在WRC结构域末端都含有miR396s结合位点。这些[基因]分布在[植物名称]基因组的6条染色体上。[植物名称]基因组的共线性分析表明,[基因1]、[基因2]与[基因3]呈现共线关系,这表明这三个基因可能是通过基因复制事件产生的。[基因1]、[基因2]和[基因3]之间的共线关系表明,[基因1]和[基因2]在[植物名称]和水稻中没有共线成员。几乎所有[基因]在生长发育组织中都表现出较高的表达水平,并且大多数[基因]的启动子含有植物激素应答和胁迫诱导的顺式元件。此外,我们发现[基因]的表达在3小时内被赤霉素(GA)显著诱导,并且GA处理1周后[植物名称]幼苗的高度显著增加。本研究的结果为进一步研究提供了潜在的候选基因,并为进一步探索[植物名称]响应GA发育的分子机制奠定了基础。

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