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拉曼Former:一种基于Transformer的拉曼混合成分量化方法。

RamanFormer: A Transformer-Based Quantification Approach for Raman Mixture Components.

作者信息

Koyun Onur Can, Keser Reyhan Kevser, Şahin Safa Onur, Bulut Damla, Yorulmaz Mustafa, Yücesoy Veysel, Töreyin Behçet Uğur

机构信息

Signal Processing for Computational Intelligence Research Group (SP4CING), Informatics Institute, Istanbul Technical University, 34469 Istanbul, Turkey.

ASELSAN Inc, Yenimahalle, 06200 Ankara, Turkey.

出版信息

ACS Omega. 2024 May 23;9(22):23241-23251. doi: 10.1021/acsomega.3c09247. eCollection 2024 Jun 4.

DOI:10.1021/acsomega.3c09247
PMID:38854537
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11154961/
Abstract

Raman spectroscopy is a noninvasive technique to identify materials by their unique molecular vibrational fingerprints. However, distinguishing and quantifying components in mixtures present challenges due to overlapping spectra, especially when components share similar features. This study presents "RamanFormer", a transformer-based model designed to enhance the analysis of Raman spectroscopy data. By effectively managing sequential data and integrating self-attention mechanisms, RamanFormer identifies and quantifies components in chemical mixtures with high precision, achieving a mean absolute error of 1.4% and a root mean squared error of 1.6%, significantly outperforming traditional methods such as least squares, MLP, VGG11, and ResNet50. Tested extensively on binary and ternary mixtures under varying conditions, including noise levels with a signal-to-noise ratio of up to 10 dB, RamanFormer proves to be a robust tool, improving the reliability of material identification and broadening the application of Raman spectroscopy in fields, such as material science, forensics, and biomedical diagnostics.

摘要

拉曼光谱是一种通过材料独特的分子振动指纹来识别材料的非侵入性技术。然而,由于光谱重叠,区分和量化混合物中的成分存在挑战,特别是当成分具有相似特征时。本研究提出了“拉曼变换器”(RamanFormer),这是一种基于变换器的模型,旨在加强对拉曼光谱数据的分析。通过有效地处理序列数据并整合自注意力机制,拉曼变换器能够高精度地识别和量化化学混合物中的成分,平均绝对误差为1.4%,均方根误差为1.6%,显著优于最小二乘法、多层感知器、VGG11和ResNet50等传统方法。在包括高达10 dB信噪比的噪声水平等不同条件下对二元和三元混合物进行了广泛测试,拉曼变换器被证明是一种强大的工具,提高了材料识别的可靠性,并拓宽了拉曼光谱在材料科学、法医学和生物医学诊断等领域的应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/485e3d79daec/ao3c09247_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/29fd7619b082/ao3c09247_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/a7aad2278421/ao3c09247_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/ecb075801dd9/ao3c09247_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/37a1fb7f9993/ao3c09247_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/0abfb655d180/ao3c09247_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/08a856eb34eb/ao3c09247_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/485e3d79daec/ao3c09247_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/29fd7619b082/ao3c09247_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/a7aad2278421/ao3c09247_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/ecb075801dd9/ao3c09247_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/37a1fb7f9993/ao3c09247_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/0abfb655d180/ao3c09247_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/08a856eb34eb/ao3c09247_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f05/11154961/485e3d79daec/ao3c09247_0007.jpg

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Nat Commun. 2023 Sep 19;14(1):5799. doi: 10.1038/s41467-023-41417-0.
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Machine learning using convolutional neural networks for SERS analysis of biomarkers in medical diagnostics.使用卷积神经网络的机器学习用于医学诊断中生物标志物的表面增强拉曼光谱分析。
J Raman Spectrosc. 2022 Dec;53(12):2044-2057. doi: 10.1002/jrs.6447. Epub 2022 Sep 12.
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Evaluating the performance of multilayer perceptron algorithm for tuberculosis disease Raman data.
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Proc Natl Acad Sci U S A. 2024 Nov 5;121(45):e2407439121. doi: 10.1073/pnas.2407439121. Epub 2024 Oct 29.
评估多层感知器算法在肺结核病拉曼数据中的性能。
Photodiagnosis Photodyn Ther. 2022 Sep;39:102924. doi: 10.1016/j.pdpdt.2022.102924. Epub 2022 May 21.
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Machine learning algorithms enhance the specificity of cancer biomarker detection using SERS-based immunoassays in microfluidic chips.机器学习算法提高了基于表面增强拉曼光谱(SERS)的微流控芯片免疫分析检测癌症生物标志物的特异性。
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