内在信号通路调节靶向蛋白降解。

Intrinsic signaling pathways modulate targeted protein degradation.

机构信息

Laboratory of Protein Degradation, Institute for Advanced Life Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo, 142-8501, Japan.

Graduate School of Pharmacy and Pharmaceutical Sciences, Hoshi University, 2-4-41 Ebara, Shinagawa-ku, Tokyo, 142-8501, Japan.

出版信息

Nat Commun. 2024 Jul 2;15(1):5379. doi: 10.1038/s41467-024-49519-z.

Abstract

Targeted protein degradation is a groundbreaking modality in drug discovery; however, the regulatory mechanisms are still not fully understood. Here, we identify cellular signaling pathways that modulate the targeted degradation of the anticancer target BRD4 and related neosubstrates BRD2/3 and CDK9 induced by CRL2- or CRL4 -based PROTACs. The chemicals identified as degradation enhancers include inhibitors of cellular signaling pathways such as poly-ADP ribosylation (PARG inhibitor PDD00017273), unfolded protein response (PERK inhibitor GSK2606414), and protein stabilization (HSP90 inhibitor luminespib). Mechanistically, PARG inhibition promotes TRIP12-mediated K29/K48-linked branched ubiquitylation of BRD4 by facilitating chromatin dissociation of BRD4 and formation of the BRD4-PROTAC-CRL2 ternary complex; by contrast, HSP90 inhibition promotes BRD4 degradation after the ubiquitylation step. Consequently, these signal inhibitors sensitize cells to the PROTAC-induced apoptosis. These results suggest that various cell-intrinsic signaling pathways spontaneously counteract chemically induced target degradation at multiple steps, which could be liberated by specific inhibitors.

摘要

靶向蛋白降解是药物发现领域的一项突破性技术;然而,其调控机制仍未被完全理解。在这里,我们确定了细胞信号通路,这些信号通路可以调节基于 CRL2 或 CRL4 的 PROTAC 诱导的抗癌靶标 BRD4 及其相关新底物 BRD2/3 和 CDK9 的靶向降解。被鉴定为降解增强剂的化学物质包括细胞信号通路抑制剂,如多聚 ADP 核糖聚合酶(PARG 抑制剂 PDD00017273)、未折叠蛋白反应(PERK 抑制剂 GSK2606414)和蛋白稳定化(HSP90 抑制剂 1uminespib)。从机制上讲,PARG 抑制通过促进 BRD4 的染色质解离和 BRD4-PROTAC-CRL2 三元复合物的形成,促进 TRIP12 介导的 BRD4 的 K29/K48 连接的分支泛素化,从而促进 BRD4 的降解;相比之下,HSP90 抑制在泛素化步骤后促进 BRD4 的降解。因此,这些信号抑制剂使细胞对 PROTAC 诱导的细胞凋亡敏感。这些结果表明,各种细胞内固有信号通路会在多个步骤自发地对抗化学诱导的靶标降解,而这些降解可以被特定的抑制剂所释放。

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