Liao Bojun, Liang Pengxiang, Tong Lu, Lu Lu, Lu Ye, Zheng Renhua, Zheng Xueyan, Chen Jinhui, Hao Zhaodong
State Key Laboratory of Tree Genetics and Breeding, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China.
Key Laboratory of Forest Genetics & Biotechnology of Ministry of Education, Nanjing Forestry University, Nanjing 210037, China.
Plants (Basel). 2024 Jul 22;13(14):2009. doi: 10.3390/plants13142009.
The DOF (DNA-binding with one finger) transcription factors are exclusive to plants and play crucial roles in plant growth, development, and environmental adaptation. Although extensive research has been conducted on the gene family in , , and , investigations concerning the role of this gene family in remain unreported, leaving its biological function largely unknown. In this study, we performed a comprehensive genome-wide identification of the gene family based on the genome, resulting in the discovery of a total of 17 gene members. Based on the results of phylogenetic analysis, the 17 LcDof proteins were classified into eight subfamilies. The motif analysis revealed the diverse nature of motifs within the D1 subfamily, which includes a distinct type of Dof transcription factor known as (Cycling Dof Factor). We further characterized the chromosomal distribution, gene structure, conserved protein motifs, and cis-elements in the promoter regions. Additionally, utilizing transcriptome data from hybrids and conducting RT-qPCR experiments, we investigated the expression patterns of under various abiotic stresses such as drought, cold, and heat stress. Notably, we found that several , particularly and , were significantly upregulated in response to abiotic stress. Furthermore, we cloned and genes and found that its encoding protein was mainly located in the nucleus by transient transformation in hybrids protoplast. Subsequently, we used -overexpressing hybrid seedlings. We found that overexpression of enhanced the cold tolerance of the plants, increasing their survival rate at -20 °C. This result was further validated by changes in physiological indicators.
单指DNA结合(DOF)转录因子是植物特有的,在植物生长、发育和环境适应中发挥着关键作用。尽管已对[具体植物1]、[具体植物2]和[具体植物3]中的该基因家族进行了广泛研究,但关于该基因家族在[目标植物]中的作用的研究尚未见报道,其生物学功能在很大程度上仍不清楚。在本研究中,我们基于[目标植物]基因组对DOF基因家族进行了全面的全基因组鉴定,共发现了17个DOF基因成员。基于系统发育分析结果,17个LcDof蛋白被分为8个亚家族。基序分析揭示了D1亚家族内基序的多样性,其中包括一种独特类型的Dof转录因子,即循环Dof因子(CDF)。我们进一步对其染色体分布、基因结构、保守蛋白基序以及启动子区域中的顺式元件进行了表征。此外,利用[目标植物]杂交种的转录组数据并进行RT-qPCR实验,我们研究了DOF在干旱、寒冷和热胁迫等各种非生物胁迫下的表达模式。值得注意的是,我们发现几个DOF,特别是[具体基因1]和[具体基因2],在非生物胁迫下显著上调。此外,我们克隆了[具体基因1]和[具体基因2]基因,并通过在[目标植物]杂交种原生质体中的瞬时转化发现其编码蛋白主要位于细胞核中。随后,我们使用了过表达[具体基因1]的[目标植物]杂交幼苗。我们发现过表达[具体基因1]增强了植物的耐寒性,提高了它们在-20℃下的存活率。生理指标的变化进一步验证了这一结果。