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分别从南极潮间带沉积物和北极土壤中分离到的新种和新种。

sp. nov. and sp. nov., isolated from Antarctic intertidal sediment and Arctic soil, respectively.

机构信息

School of Oceanography, Shanghai Jiao Tong University, Shanghai 200030, PR China.

Key Laboratory for Polar Science, Polar Research Institute of China, Ministry of Natural Resources, Shanghai 200136, PR China.

出版信息

Int J Syst Evol Microbiol. 2024 Jul;74(7). doi: 10.1099/ijsem.0.006466.

Abstract

Two Gram-stain-negative, aerobic, rod-shaped, non-endospore-forming and motile bacterial strains, designated IT1137 and S025, were isolated from an intertidal sediment sample collected from the Fildes Peninsula (King George Island, Maritime Antarctica) and a soil sample under red snow in the Ny-Ålesund region (Svalbard, High Arctic), respectively. The 16S rRNA gene sequence similarity values grouped them in the genus . The two strains were characterized phenotypically using API 20E, API 20NE, API ZYM and Biolog GENIII tests and chemotaxonomically by their fatty acid contents, polar lipids and respiratory quinones. Multilocus sequence analysis (concatenated 16S rRNA, , and sequences), together with genome comparisons by average nucleotide identity and digital DNA-DNA hybridization, were performed. The results showed that the similarity values of the two isolates with the type strains of related species were below the recognized thresholds for species definition. Based on polyphasic taxonomy analysis, it can be concluded that strains IT1137 and S025 represent two novel species of the genus , for which the names sp. nov. (type strain IT1137=PMCC 100533=CCTCC AB 2023226=JCM 36637) and sp. nov. (type strain S025=PMCC 200367= CCTCC AB 2023225=JCM 36638) are proposed.

摘要

两株革兰氏阴性、需氧、杆状、非芽孢形成和能动的细菌菌株,分别命名为 IT1137 和 S025,分别从菲尔德斯半岛(乔治王岛,南极洲海域)的潮间带沉积物样本和 Ny-Ålesund 地区(斯瓦尔巴群岛,北极地区)的红色雪下土壤样本中分离得到。16S rRNA 基因序列相似性值将它们归入 属。通过 API 20E、API 20NE、API ZYM 和 Biolog GENIII 测试对这两株菌株进行了表型特征分析,并通过脂肪酸含量、极性脂质和呼吸醌进行了化学分类学分析。通过多位点序列分析(连接的 16S rRNA、、和 序列)以及平均核苷酸同一性和数字 DNA-DNA 杂交的基因组比较进行了研究。结果表明,这两个分离株与相关 种的模式株的相似性值低于种定义的公认阈值。基于多相分类学分析,可以得出结论,菌株 IT1137 和 S025 代表了 属的两个新种,分别命名为 sp. nov.(模式株 IT1137=PMCC 100533=CCTCC AB 2023226=JCM 36637)和 sp. nov.(模式株 S025=PMCC 200367=CCTCC AB 2023225=JCM 36638)。

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