Manley Harrison, Bayley Thomas, Danelian Gabriel, Burton Lucy, Finnie Thomas, Charlett Andre, Watkins Nicholas A, Birrell Paul, De Angelis Daniela, Keeling Matt, Funk Sebastian, Medley Graham, Pellis Lorenzo, Baguelin Marc, Ackland Graeme J, Hutchinson Johanna, Riley Steven, Panovska-Griffiths Jasmina
UK Health Security Agency, London, UK.
MRC Biostatistics Unit, University of Cambridge, , UK.
R Soc Open Sci. 2024 May 22;11(5):231832. doi: 10.1098/rsos.231832. eCollection 2024 May.
Mathematical modelling has played an important role in offering informed advice during the COVID-19 pandemic. In England, a cross government and academia collaboration generated medium-term projections (MTPs) of possible epidemic trajectories over the future 4-6 weeks from a collection of epidemiological models. In this article, we outline this collaborative modelling approach and evaluate the accuracy of the combined and individual model projections against the data over the period November 2021-December 2022 when various Omicron subvariants were spreading across England. Using a number of statistical methods, we quantify the predictive performance of the model projections for both the combined and individual MTPs, by evaluating the point and probabilistic accuracy. Our results illustrate that the combined MTPs, produced from an ensemble of heterogeneous epidemiological models, were a closer fit to the data than the individual models during the periods of epidemic growth or decline, with the 90% confidence intervals widest around the epidemic peaks. We also show that the combined MTPs increase the robustness and reduce the biases associated with a single model projection. Learning from our experience of ensemble modelling during the COVID-19 epidemic, our findings highlight the importance of developing cross-institutional multi-model infectious disease hubs for future outbreak control.
在新冠疫情期间,数学建模在提供明智建议方面发挥了重要作用。在英国,政府与学术界的跨部门合作基于一系列流行病学模型,对未来4至6周内可能的疫情发展轨迹进行了中期预测(MTP)。在本文中,我们概述了这种协作建模方法,并在2021年11月至2022年12月期间各种奥密克戎亚变体在英国传播时,根据数据评估了综合模型和单个模型预测的准确性。我们使用多种统计方法,通过评估点预测准确性和概率准确性,对综合及单个中期预测的模型预测的预测性能进行了量化。我们的结果表明,在疫情增长或下降期间,由多种不同流行病学模型组成的综合中期预测比单个模型更符合数据,90%置信区间在疫情峰值附近最宽。我们还表明,综合中期预测提高了稳健性,并减少了与单一模型预测相关的偏差。从我们在新冠疫情期间的集成建模经验中吸取教训,我们的研究结果凸显了建立跨机构多模型传染病中心以控制未来疫情爆发的重要性。