NYU Grossman School of Medicine, New York, New York, USA.
New York City Department of Health and Mental Hygiene, New York, New York, USA.
J Med Virol. 2024 Aug;96(8):e29791. doi: 10.1002/jmv.29791.
In mid-2022, New York City (NYC) became the epicenter of the US mpox outbreak. We provided real-time mpox case forecasts to the NYC Department of Health and Mental Hygiene to aid in outbreak response. Forecasting methodologies evolved as the epidemic progressed. Initially, lacking knowledge of at-risk population size, we used exponential growth models to forecast cases. Once exponential growth slowed, we used a Susceptible-Exposed-Infectious-Recovered (SEIR) model. Retrospectively, we explored if forecasts could have been improved using an SEIR model in place of our early exponential growth model, with or without knowing the case detection rate. Early forecasts from exponential growth models performed poorly, as 2-week mean absolute error (MAE) grew from 53 cases/week (July 1-14) to 457 cases/week (July 15-28). However, when exponential growth slowed, providing insight into susceptible population size, an SEIR model was able to accurately predict the remainder of the outbreak (7-week MAE: 13.4 cases/week). Retrospectively, we found there was not enough known about the epidemiological characteristics of the outbreak to parameterize an SEIR model early on. However, if the at-risk population and case detection rate were known, an SEIR model could have improved accuracy over exponential growth models early in the outbreak.
2022 年年中,纽约市(NYC)成为美国猴痘疫情的中心。我们为纽约市卫生局和精神卫生部提供实时猴痘病例预测,以帮助应对疫情。随着疫情的发展,预测方法也在不断演变。最初,由于缺乏对高危人群规模的了解,我们使用指数增长模型来预测病例。一旦指数增长放缓,我们就使用易感-暴露-感染-恢复(SEIR)模型。事后,我们探讨了如果在了解或不了解病例检出率的情况下,使用 SEIR 模型是否可以改进早期的指数增长模型的预测。早期的指数增长模型预测表现不佳,因为两周平均绝对误差(MAE)从每周 53 例(7 月 1 日至 7 月 14 日)增加到每周 457 例(7 月 15 日至 7 月 28 日)。然而,当指数增长放缓时,SEIR 模型提供了对易感人群规模的洞察,能够准确预测疫情的剩余阶段(7 周 MAE:每周 13.4 例)。事后分析发现,早期对疫情的流行病学特征了解不足,无法对 SEIR 模型进行参数化。然而,如果已知高危人群和病例检出率,那么在疫情早期,SEIR 模型可以比指数增长模型提高预测准确性。