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用于病理诊断辅助的细胞核分割多功能聚合网络:一种新的 MA-Net 构建。

Multifunctional aggregation network of cell nuclei segmentation aiming histopathological diagnosis assistance: A new MA-Net construction.

机构信息

School of Information Engineering, Minzu University of China, Beijing, China.

Department of Pathology, Third Medical Center of Chinese PLA General Hospital, Beijing, China.

出版信息

PLoS One. 2024 Sep 6;19(9):e0308326. doi: 10.1371/journal.pone.0308326. eCollection 2024.

Abstract

Automated diagnostic systems can enhance the accuracy and efficiency of pathological diagnoses, nuclear segmentation plays a crucial role in computer-aided diagnosis systems for histopathology. However, achieving accurate nuclear segmentation is challenging due to the complex background tissue structures and significant variations in cell morphology and size in pathological images. In this study, we have proposed a U-Net based deep learning model, called MA-Net(Multifunctional Aggregation Network), to accurately segmenting nuclei from H&E stained images. In contrast to previous studies that focused on improving a single module of the network, we applied feature fusion modules, attention gate units, and atrous spatial pyramid pooling to the encoder and decoder, skip connections, and bottleneck of U-Net, respectively, to enhance the network's performance in nuclear segmentation. The dice coefficient loss was used during model training to enhance the network's ability to segment small objects. We applied the proposed MA-Net to multiple public datasets, and comprehensive results showed that this method outperforms the original U-Net method and other state-of-the-art methods in nuclei segmentation tasks. The source code of our work can be found in https://github.com/LinaZhaoAIGroup/MA-Net.

摘要

自动化诊断系统可以提高病理诊断的准确性和效率,核分割在组织病理学计算机辅助诊断系统中起着至关重要的作用。然而,由于病理图像中背景组织结构复杂,细胞形态和大小变化显著,因此实现准确的核分割具有挑战性。在本研究中,我们提出了一种基于 U-Net 的深度学习模型,称为 MA-Net(多功能聚合网络),用于从 H&E 染色图像中准确分割核。与之前专注于改进网络单个模块的研究不同,我们分别在编码器和解码器、跳连接和 U-Net 的瓶颈处应用了特征融合模块、注意力门单元和空洞空间金字塔池化,以增强网络在核分割中的性能。在模型训练过程中使用了骰子系数损失,以增强网络分割小物体的能力。我们将提出的 MA-Net 应用于多个公共数据集,综合结果表明,该方法在核分割任务中优于原始 U-Net 方法和其他最先进的方法。我们工作的源代码可以在 https://github.com/LinaZhaoAIGroup/MA-Net 找到。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4571/11379384/574e224279a5/pone.0308326.g001.jpg

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