四种针对多重耐药菌的裂解性噬菌体的全基因组序列
Complete genome sequences of four lytic bacteriophages against multidrug-resistant .
作者信息
Soro Oumarou, Kigen Collins, Nyerere Andrew, Gachoya Moses, Wachira James, Onyonyi Vanessa, Georges Martin, Wataka Allan, Ondolo Stephen, Cherono Karen, Odoyo Erick, Musila Lillian
机构信息
Department of Molecular Biology and Biotechnology, Pan African University Institute for Basic Sciences, Technology, and Innovation, Nairobi, Kenya.
Department of Emerging Infectious Diseases, Walter Reed Army Institute of Research-Africa/Kenya Medical Research Institute, Nairobi, Kenya.
出版信息
Microbiol Resour Announc. 2024 Oct 10;13(10):e0068824. doi: 10.1128/mra.00688-24. Epub 2024 Sep 9.
Abstract
We report the genome sequences of four phages isolated from environmental wastewater in Kenya. They are double-stranded DNA phages with genomes varying in length from 42,231 to 43,348 bp, with G+C contents ranging from 34.96% to 35.2%. The genomes contain 78-82 coding sequences.
摘要
我们报告了从肯尼亚环境废水中分离出的四种噬菌体的基因组序列。它们是双链DNA噬菌体，基因组长度在42,231至43,348碱基对之间变化，G+C含量在34.96%至35.2%之间。这些基因组包含78-82个编码序列。
相似文献
1
Complete genome sequences of four lytic bacteriophages against multidrug-resistant .四种针对多重耐药菌的裂解性噬菌体的全基因组序列
Microbiol Resour Announc. 2024 Oct 10;13(10):e0068824. doi: 10.1128/mra.00688-24. Epub 2024 Sep 9.
2
Complete genome sequences of 12 lytic phages against multidrug-resistant .12种针对多重耐药菌的裂解性噬菌体的全基因组序列
Microbiol Resour Announc. 2024 Oct 10;13(10):e0068724. doi: 10.1128/mra.00687-24. Epub 2024 Sep 10.
3
Characterization and Anti-Biofilm Activity of Lytic Enterococcus Phage vB_Efs8_KEN04 against Clinical Isolates of Multidrug-Resistant in Kenya.肯尼亚产溶肠球菌噬菌体 vB_Efs8_KEN04 的特性及其抗多药耐药临床分离株的生物膜活性
Viruses. 2024 Aug 9;16(8):1275. doi: 10.3390/v16081275.
4
Isolation and characterization of a novel lytic bacteriophage vB_Efm_LG62 infecting Enterococcus faecium.分离鉴定一株裂解肠球菌噬菌体 vB_Efm_LG62
Virus Genes. 2023 Oct;59(5):763-774. doi: 10.1007/s11262-023-02016-9. Epub 2023 Jul 9.
5
Characterization and complete genome sequence analysis of novel bacteriophage IME-EFm1 infecting Enterococcus faecium.新型粪肠球菌噬菌体IME-EFm1的特性鉴定及全基因组序列分析
J Gen Virol. 2014 Nov;95(Pt 11):2565-2575. doi: 10.1099/vir.0.067553-0. Epub 2014 Jul 30.
6
Comparative analysis of Bacterial Vaginosis microbiota among pregnant and non-pregnant females and isolation of phages against Enterococcus faecalis, Enterococcus faecium, and Shigella flexneri strains.比较分析孕妇和非孕妇阴道微生物菌群的差异，并分离针对粪肠球菌、屎肠球菌和福氏志贺菌的噬菌体。
Microb Pathog. 2020 Dec;149:104588. doi: 10.1016/j.micpath.2020.104588. Epub 2020 Oct 22.
7
A novel termini analysis theory using HTS data alone for the identification of Enterococcus phage EF4-like genome termini.一种仅使用高通量测序（HTS）数据来鉴定肠球菌噬菌体EF4样基因组末端的新型末端分析理论。
BMC Genomics. 2015 May 28;16(1):414. doi: 10.1186/s12864-015-1612-3.
8
Evaluation of Bacteriophage Cocktails Alone and in Combination with Daptomycin against Daptomycin-Nonsusceptible Enterococcus faecium.单独使用噬菌体鸡尾酒和联合使用达托霉素对抗达托霉素不敏感粪肠球菌的评估。
Antimicrob Agents Chemother. 2022 Jan 18;66(1):e0162321. doi: 10.1128/AAC.01623-21. Epub 2021 Nov 1.
9
Isolation and characterization of lytic bacteriophages from sewage at an egyptian tertiary care hospital against methicillin-resistant clinical isolates.从埃及一家三级护理医院的污水中分离并鉴定针对耐甲氧西林临床分离株的裂解性噬菌体。
Saudi J Biol Sci. 2022 May;29(5):3097-3106. doi: 10.1016/j.sjbs.2022.03.019. Epub 2022 Mar 19.
10
The virtue of training: extending phage host spectra against vancomycin-resistant strains using the Appelmans method.培养的优点：使用 Appelmans 方法扩大噬菌体宿主谱以对抗万古霉素耐药菌株。
Antimicrob Agents Chemother. 2024 May 2;68(5):e0143923. doi: 10.1128/aac.01439-23. Epub 2024 Apr 9.
引用本文的文献
1
Complete genome sequences of 14 lytic bacteriophages against from Kenya belonging to the genera and .来自肯尼亚的14种针对 属和 属的裂解性噬菌体的完整基因组序列。 （原文此处against后内容缺失）
Microbiol Resour Announc. 2025 Apr 10;14(4):e0119324. doi: 10.1128/mra.01193-24. Epub 2025 Feb 25.
2
Bacteriophage Therapy as a Promising Alternative for Antibiotic-Resistant : Advances and Challenges.噬菌体疗法作为抗生素耐药性的一种有前景的替代方法：进展与挑战
Antibiotics (Basel). 2024 Nov 23;13(12):1120. doi: 10.3390/antibiotics13121120.
本文引用的文献
1
Pharokka: a fast scalable bacteriophage annotation tool.Pharokka：一种快速可扩展的噬菌体注释工具。
Bioinformatics. 2023 Jan 1;39(1). doi: 10.1093/bioinformatics/btac776.
2
INfrastructure for a PHAge REference Database: Identification of Large-Scale Biases in the Current Collection of Cultured Phage Genomes.噬菌体参考数据库的基础设施：识别当前培养噬菌体基因组集合中的大规模偏差
Phage (New Rochelle). 2021 Dec 1;2(4):214-223. doi: 10.1089/phage.2021.0007. Epub 2021 Dec 16.
3
Efficacy of diversely isolated lytic phages against multi-drug resistant isolates in Kenya.肯尼亚不同来源的裂解性噬菌体对多重耐药菌株的疗效
Afr J Lab Med. 2022 Aug 11;11(1):1673. doi: 10.4102/ajlm.v11i1.1673. eCollection 2022.
4
PhageLeads: Rapid Assessment of Phage Therapeutic Suitability Using an Ensemble Machine Learning Approach.噬菌体引领：利用集成机器学习方法快速评估噬菌体治疗适用性。
Viruses. 2022 Feb 8;14(2):342. doi: 10.3390/v14020342.
5
Lytic bacteriophages facilitate antibiotic sensitization of .裂解性噬菌体促进了……的抗生素敏感性。 （原句不完整，翻译可能会有偏差）
Antimicrob Agents Chemother. 2023 May 1;65(5). doi: 10.1128/AAC.00143-21. Epub 2021 Mar 1.
6
CheckV assesses the quality and completeness of metagenome-assembled viral genomes.CheckV 评估宏基因组组装病毒基因组的质量和完整性。
Nat Biotechnol. 2021 May;39(5):578-585. doi: 10.1038/s41587-020-00774-7. Epub 2020 Dec 21.
7
Enterococcus faecium: from microbiological insights to practical recommendations for infection control and diagnostics.屎肠球菌：从微生物学见解到感染控制和诊断的实用建议。
Antimicrob Resist Infect Control. 2020 Aug 10;9(1):130. doi: 10.1186/s13756-020-00770-1.
8
Complete Genome Sequence of Broad-Host-Range Staphylococcus aureus Myophage ESa1.广宿主范围金黄色葡萄球菌肌噬菌体ESa1的全基因组序列
Microbiol Resour Announc. 2020 Jul 23;9(30):e00730-20. doi: 10.1128/MRA.00730-20.
9
Correlation of Host Range Expansion of Therapeutic Bacteriophage Sb-1 with Allele State at a Hypervariable Repeat Locus.宿主范围扩展的治疗性噬菌体 Sb-1 与高变重复位点等位基因状态的相关性。
Appl Environ Microbiol. 2019 Oct 30;85(22). doi: 10.1128/AEM.01209-19. Print 2019 Nov 15.
10
fastp: an ultra-fast all-in-one FASTQ preprocessor.fastp：一个超快速的一体化 FASTQ 预处理程序。
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
Zotero 插件