Navigate: an open-source platform for smart light-sheet microscopy.
作者信息
Marin Zach, Wang Xiaoding, Collison Dax W, McFadden Conor, Lin Jinlong, Borges Hazel M, Chen Bingying, Mehra Dushyant, Shen Qionghua, Gałecki Seweryn, Daetwyler Stephan, Sheppard Steven J, Thien Phu, Porter Baylee A, Conzen Suzanne D, Shepherd Douglas P, Fiolka Reto, Dean Kevin M
机构信息
Lyda Hill Department of Bioinformatics, UT Southwestern Medical Center, Dallas, TX, USA.
Max Perutz Labs, Department of Structural and Computational Biology, University of Vienna, Vienna, Austria.
出版信息
Nat Methods. 2024 Nov;21(11):1967-1969. doi: 10.1038/s41592-024-02413-4.
Abstract
摘要
相似文献
1
Navigate: an open-source platform for smart light-sheet microscopy.Navigate：一个用于智能光片显微镜的开源平台。
Nat Methods. 2024 Nov;21(11):1967-1969. doi: 10.1038/s41592-024-02413-4.
2
navigate: an open-source platform for smart light-sheet microscopy.Navigate：一个用于智能光片显微镜的开源平台。
bioRxiv. 2024 Feb 11:2024.02.09.579083. doi: 10.1101/2024.02.09.579083.
3
Light-sheets and smart microscopy, an exciting future is dawning.光片和智能显微镜，一个激动人心的未来正在到来。
Commun Biol. 2023 May 9;6(1):502. doi: 10.1038/s42003-023-04857-4.
4
SPIM-fluid: open source light-sheet based platform for high-throughput imaging.SPIM流体：基于光片的开源高通量成像平台。
Biomed Opt Express. 2015 Oct 19;6(11):4447-56. doi: 10.1364/BOE.6.004447. eCollection 2015 Nov 1.
5
Light-sheet microscopy for everyone? Experience of building an OpenSPIM to study flatworm development.人人都能使用的光片显微镜？构建用于研究涡虫发育的开放式选择性平面照明显微镜的经验。
BMC Dev Biol. 2016 Jun 30;16(1):22. doi: 10.1186/s12861-016-0122-0.
6
SMART: An Open-Source Extension of WholeBrain for Intact Mouse Brain Registration and Segmentation.SMART： WholeBrain 的开源扩展，用于完整小鼠脑的注册和分割。
eNeuro. 2022 May 3;9(3). doi: 10.1523/ENEURO.0482-21.2022. Print 2022 May-Jun.
7
Tilt (in)variant lateral scan in oblique plane microscopy: a geometrical optics approach.倾斜（内）变量横向扫描斜平面显微镜检查：一种几何光学方法。
Biomed Opt Express. 2020 May 28;11(6):3346-3359. doi: 10.1364/BOE.389654. eCollection 2020 Jun 1.
8
Enhanced Light Sheet Elastic Scattering Microscopy by Using a Supercontinuum Laser.利用超连续谱激光增强光片弹性散射显微镜技术
Methods Protoc. 2019 Jul 5;2(3):57. doi: 10.3390/mps2030057.
9
Mantis: High-throughput 4D imaging and analysis of the molecular and physical architecture of cells.Mantis：细胞分子与物理结构的高通量4D成像及分析
PNAS Nexus. 2024 Aug 9;3(9):pgae323. doi: 10.1093/pnasnexus/pgae323. eCollection 2024 Sep.
10
Health care transformation through collaboration on open-source informatics projects: integrating a medical applications platform, research data repository, and patient summarization.通过开源信息学项目合作实现医疗保健转型：整合医疗应用平台、研究数据存储库和患者摘要。
Interact J Med Res. 2013 May 30;2(1):e11. doi: 10.2196/ijmr.2454.
引用本文的文献
1
Three-dimensional assessments are necessary to determine the true, spatially resolved composition of tissues.三维评估对于确定组织的真实、空间分辨组成是必要的。
Cell Rep Methods. 2025 Jun 16;5(6):101075. doi: 10.1016/j.crmeth.2025.101075. Epub 2025 Jun 9.
2
Active remote focus stabilization in oblique plane microscopy.斜平面显微镜中的主动远程聚焦稳定
Biomed Opt Express. 2025 Feb 26;16(3):1216-1224. doi: 10.1364/BOE.553545. eCollection 2025 Mar 1.
3
Adaptive optics in an oblique plane microscope.斜平面显微镜中的自适应光学。
Biomed Opt Express. 2024 Jul 9;15(8):4498-4512. doi: 10.1364/BOE.524013. eCollection 2024 Aug 1.
4
Mechanically sheared axially swept light-sheet microscopy.机械剪切轴向扫描光片显微镜术
Biomed Opt Express. 2024 Aug 19;15(9):5314-5327. doi: 10.1364/BOE.526145. eCollection 2024 Sep 1.
5
Universal consensus 3D segmentation of cells from 2D segmented stacks.从二维分割堆栈中对细胞进行通用一致的三维分割。
bioRxiv. 2025 Mar 20:2024.05.03.592249. doi: 10.1101/2024.05.03.592249.
6
Adaptive Optics in an Oblique Plane Microscope.斜平面显微镜中的自适应光学
bioRxiv. 2024 Mar 22:2024.03.21.586191. doi: 10.1101/2024.03.21.586191.
本文引用的文献
1
Smart lattice light-sheet microscopy for imaging rare and complex cellular events.智能晶格光片显微镜用于成像罕见和复杂的细胞事件。
Nat Methods. 2024 Feb;21(2):301-310. doi: 10.1038/s41592-023-02126-0. Epub 2024 Jan 2.
2
An integrated platform for high-throughput nanoscopy.高通量纳米显微镜的集成平台。
Nat Biotechnol. 2023 Nov;41(11):1549-1556. doi: 10.1038/s41587-023-01702-1. Epub 2023 Mar 13.
3
Event-driven acquisition for content-enriched microscopy.基于事件驱动的获取技术在富含内容的显微镜中的应用
Nat Methods. 2022 Oct;19(10):1262-1267. doi: 10.1038/s41592-022-01589-x. Epub 2022 Sep 8.
4
Event-triggered STED imaging.事件触发的 STED 成像。
Nat Methods. 2022 Oct;19(10):1268-1275. doi: 10.1038/s41592-022-01588-y. Epub 2022 Sep 8.
5
OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies.OME-NGFF：用于扩展生物成像数据访问策略的下一代文件格式。
Nat Methods. 2021 Dec;18(12):1496-1498. doi: 10.1038/s41592-021-01326-w. Epub 2021 Nov 29.
6
ilastik: interactive machine learning for (bio)image analysis.ilastik：用于（生物）图像处理的交互式机器学习。
Nat Methods. 2019 Dec;16(12):1226-1232. doi: 10.1038/s41592-019-0582-9. Epub 2019 Sep 30.
7
The mesoSPIM initiative: open-source light-sheet microscopes for imaging cleared tissue.mesoSPIM 计划：用于对组织进行明场成像的开源光片显微镜
Nat Methods. 2019 Nov;16(11):1105-1108. doi: 10.1038/s41592-019-0554-0. Epub 2019 Sep 16.
8
In Toto Imaging and Reconstruction of Post-Implantation Mouse Development at the Single-Cell Level.单细胞水平下的植入后小鼠发育的全胚胎成像和重建。
Cell. 2018 Oct 18;175(3):859-876.e33. doi: 10.1016/j.cell.2018.09.031. Epub 2018 Oct 11.
9
BigDataViewer: visualization and processing for large image data sets.大数据查看器：用于大型图像数据集的可视化与处理
Nat Methods. 2015 Jun;12(6):481-3. doi: 10.1038/nmeth.3392.
10
Micropilot: automation of fluorescence microscopy-based imaging for systems biology.微操手：基于荧光显微镜成像的自动化系统生物学
Nat Methods. 2011 Mar;8(3):246-9. doi: 10.1038/nmeth.1558. Epub 2011 Jan 23.
Zotero 插件