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磷酸转移酶系统葡萄糖转运蛋白的结构与机制。

Structure and mechanism of a phosphotransferase system glucose transporter.

机构信息

Institute of Biochemistry and Molecular Medicine, Medical Faculty, University of Bern, Bern, Switzerland.

出版信息

Nat Commun. 2024 Sep 12;15(1):7992. doi: 10.1038/s41467-024-52100-3.

Abstract

Glucose is the primary source of energy for many organisms and is efficiently taken up by bacteria through a dedicated transport system that exhibits high specificity. In Escherichia coli, the glucose-specific transporter IICB serves as the major glucose transporter and functions as a component of the phosphoenolpyruvate-dependent phosphotransferase system. Here, we report cryo-electron microscopy (cryo-EM) structures of the glucose-bound IICB protein. The dimeric transporter embedded in lipid nanodiscs was captured in the occluded, inward- and occluded, outward-facing conformations. Together with biochemical and biophysical analyses, and molecular dynamics (MD) simulations, we provide insights into the molecular basis and dynamics for substrate recognition and binding, including the gates regulating the binding sites and their accessibility. By combination of these findings, we present a mechanism for glucose transport across the plasma membrane. Overall, this work provides molecular insights into the structure, dynamics, and mechanism of the IICB transporter in a native-like lipid environment.

摘要

葡萄糖是许多生物的主要能量来源,细菌通过专门的运输系统高效地摄取葡萄糖,该系统表现出高度的特异性。在大肠杆菌中,葡萄糖特异性转运蛋白 IICB 作为主要的葡萄糖转运蛋白,作为磷酸烯醇丙酮酸依赖的磷酸转移酶系统的组成部分发挥作用。在这里,我们报告了结合葡萄糖的 IICB 蛋白的冷冻电镜(cryo-EM)结构。嵌入脂质纳米盘中的二聚体转运蛋白分别被捕获在被占据的、内向和被占据的、外向构象中。结合生化和生物物理分析以及分子动力学(MD)模拟,我们深入了解了底物识别和结合的分子基础和动力学,包括调节结合位点及其可及性的门。通过结合这些发现,我们提出了一种穿过质膜进行葡萄糖转运的机制。总的来说,这项工作为 IICB 转运蛋白在类似天然的脂质环境中的结构、动力学和机制提供了分子见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/307f/11393339/68b579362acb/41467_2024_52100_Fig1_HTML.jpg

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