• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

利用监督机器学习算法探索拓扑描述符在预测抗HIV药物理化性质中的作用。

Exploring the role of topological descriptors to predict physicochemical properties of anti-HIV drugs by using supervised machine learning algorithms.

作者信息

Ahmed Wakeel, Zaman Shahid, Asif Eizzah, Ali Kashif, Mahmoud Emad E, Asheboss Mamo Abebe

机构信息

Department of Mathematics, University of Sialkot, Sialkot, 51310, Pakistan.

Department of Mathematics, COMSATS University, Islamabad Lahore Campus, Lahore, 51000, Pakistan.

出版信息

BMC Chem. 2024 Sep 12;18(1):167. doi: 10.1186/s13065-024-01266-4.

DOI:10.1186/s13065-024-01266-4
PMID:39267184
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11395299/
Abstract

In order to explore the role of topological indices for predicting physio-chemical properties of anti-HIV drugs, this research uses python program-based algorithms to compute topological indices as well as machine learning algorithms. Degree-based topological indices are calculated using Python algorithm, providing important information about the structural behavior of drugs that are essential to their anti-HIV effectiveness. Furthermore, machine learning algorithms analyze the physio-chemical properties that correspond to anti-HIV activities, making use of their ability to identify complex trends in large, convoluted datasets. In addition to improving our comprehension of the links between molecular structure and effectiveness, the collaboration between machine learning and QSPR research further highlights the potential of computational approaches in drug discovery. This work reveals the mechanisms underlying anti-HIV effectiveness, which paves the way for the development of more potent anti-HIV drugs. This work reveals the mechanisms underlying anti-HIV efficiency, which paves the way for the development of more potent anti-HIV drugs which demonstrates the invaluable advantages of machine learning in assessing drug properties by clarifying the biological processes underlying anti-HIV behavior, which paves the way for the design and development of more effective anti-HIV drugs.

摘要

为了探究拓扑指数在预测抗HIV药物理化性质方面的作用,本研究使用基于Python程序的算法来计算拓扑指数以及机器学习算法。基于度的拓扑指数通过Python算法计算得出,它提供了有关药物结构行为的重要信息,而这些信息对于药物的抗HIV有效性至关重要。此外,机器学习算法利用其在大型复杂数据集中识别复杂趋势的能力,分析与抗HIV活性相对应的理化性质。除了增进我们对分子结构与有效性之间联系的理解之外,机器学习与定量构效关系(QSPR)研究之间的合作进一步凸显了计算方法在药物发现中的潜力。这项工作揭示了抗HIV有效性的潜在机制,为开发更有效的抗HIV药物铺平了道路。这项工作揭示了抗HIV效率的潜在机制,为开发更有效的抗HIV药物铺平了道路,这通过阐明抗HIV行为背后的生物学过程,展示了机器学习在评估药物性质方面的宝贵优势,为设计和开发更有效的抗HIV药物铺平了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/4296a257e92e/13065_2024_1266_Fig27_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/555ce0463260/13065_2024_1266_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/d881d37d4a42/13065_2024_1266_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/63536e63f486/13065_2024_1266_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/c75315567551/13065_2024_1266_Figa_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/c4af7943c78c/13065_2024_1266_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/40e6358f066c/13065_2024_1266_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/9ac735603cdf/13065_2024_1266_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/112146bd06cb/13065_2024_1266_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/65ceffe5f8e6/13065_2024_1266_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/3fc95cc47d78/13065_2024_1266_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/92fc1a553788/13065_2024_1266_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/45db7cd87199/13065_2024_1266_Fig11_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/35b4e190ddb7/13065_2024_1266_Fig12_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/16753dcf4959/13065_2024_1266_Fig13_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/b99490731b0f/13065_2024_1266_Fig14_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/a24521f8b877/13065_2024_1266_Fig15_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/d47a249a5b5b/13065_2024_1266_Fig16_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/123f0517ac24/13065_2024_1266_Fig17_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/b76edb0039b6/13065_2024_1266_Fig18_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/81ed499a8e35/13065_2024_1266_Fig19_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/0d7002db990a/13065_2024_1266_Fig20_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/633604d03a5d/13065_2024_1266_Fig21_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/564da90a1fee/13065_2024_1266_Fig22_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/828dd6c38b57/13065_2024_1266_Fig23_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/90a57f5d3354/13065_2024_1266_Fig24_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/630179e8a247/13065_2024_1266_Fig25_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/98b426f13ed9/13065_2024_1266_Fig26_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/4296a257e92e/13065_2024_1266_Fig27_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/555ce0463260/13065_2024_1266_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/d881d37d4a42/13065_2024_1266_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/63536e63f486/13065_2024_1266_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/c75315567551/13065_2024_1266_Figa_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/c4af7943c78c/13065_2024_1266_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/40e6358f066c/13065_2024_1266_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/9ac735603cdf/13065_2024_1266_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/112146bd06cb/13065_2024_1266_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/65ceffe5f8e6/13065_2024_1266_Fig8_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/3fc95cc47d78/13065_2024_1266_Fig9_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/92fc1a553788/13065_2024_1266_Fig10_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/45db7cd87199/13065_2024_1266_Fig11_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/35b4e190ddb7/13065_2024_1266_Fig12_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/16753dcf4959/13065_2024_1266_Fig13_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/b99490731b0f/13065_2024_1266_Fig14_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/a24521f8b877/13065_2024_1266_Fig15_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/d47a249a5b5b/13065_2024_1266_Fig16_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/123f0517ac24/13065_2024_1266_Fig17_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/b76edb0039b6/13065_2024_1266_Fig18_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/81ed499a8e35/13065_2024_1266_Fig19_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/0d7002db990a/13065_2024_1266_Fig20_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/633604d03a5d/13065_2024_1266_Fig21_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/564da90a1fee/13065_2024_1266_Fig22_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/828dd6c38b57/13065_2024_1266_Fig23_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/90a57f5d3354/13065_2024_1266_Fig24_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/630179e8a247/13065_2024_1266_Fig25_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/98b426f13ed9/13065_2024_1266_Fig26_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ea58/11395299/4296a257e92e/13065_2024_1266_Fig27_HTML.jpg

相似文献

1
Exploring the role of topological descriptors to predict physicochemical properties of anti-HIV drugs by using supervised machine learning algorithms.利用监督机器学习算法探索拓扑描述符在预测抗HIV药物理化性质中的作用。
BMC Chem. 2024 Sep 12;18(1):167. doi: 10.1186/s13065-024-01266-4.
2
A QSPR analysis of physical properties of antituberculosis drugs using neighbourhood degree-based topological indices and support vector regression.基于邻域度拓扑指数和支持向量回归的抗结核药物物理性质的定量构效关系分析
Heliyon. 2024 Mar 20;10(7):e28260. doi: 10.1016/j.heliyon.2024.e28260. eCollection 2024 Apr 15.
3
A python based algorithmic approach to optimize sulfonamide drugs via mathematical modeling.基于 Python 的算法通过数学建模来优化磺胺类药物。
Sci Rep. 2024 May 28;14(1):12264. doi: 10.1038/s41598-024-62819-0.
4
A study on anti-malaria drugs using degree-based topological indices through QSPR analysis.基于度拓扑指数的 QSPR 分析对抗疟药物的研究。
Math Biosci Eng. 2023 Jan;20(2):3594-3609. doi: 10.3934/mbe.2023167. Epub 2022 Dec 8.
5
QSPR Analysis of Drugs for Treatment of Schizophrenia Using Topological Indices.使用拓扑指数对治疗精神分裂症药物的定量构效关系分析
ACS Omega. 2023 Oct 24;8(44):41417-41426. doi: 10.1021/acsomega.3c05000. eCollection 2023 Nov 7.
6
Molecular structural modeling and physical characteristics of anti-breast cancer drugs via some novel topological descriptors and regression models.通过一些新型拓扑描述符和回归模型对抗乳腺癌药物进行分子结构建模和物理特性研究
Curr Res Struct Biol. 2024 Feb 29;7:100134. doi: 10.1016/j.crstbi.2024.100134. eCollection 2024.
7
Utilizing topological indices in QSPR modeling to identify non-cancer medications with potential anti-cancer properties: a promising strategy for drug repurposing.在定量构效关系建模中利用拓扑指数来识别具有潜在抗癌特性的非抗癌药物:一种有前景的药物再利用策略。
Front Chem. 2024 Aug 8;12:1410882. doi: 10.3389/fchem.2024.1410882. eCollection 2024.
8
Structure-property modeling of physicochemical properties of fractal trigonal triphenylenoids by means of novel degree-based topological indices.基于新型度拓扑指数的分形三角苯并菲类化合物物理化学性质的结构-性质建模
Eur Phys J E Soft Matter. 2024 Jun 18;47(6):42. doi: 10.1140/epje/s10189-024-00438-3.
9
Statistical analysis of topological indices in linear phenylenes for predicting physicochemical properties using algorithms.使用算法对线性亚苯基中的拓扑指数进行统计分析以预测物理化学性质。
Sci Rep. 2024 Aug 20;14(1):19282. doi: 10.1038/s41598-024-70187-y.
10
Physicochemical Significance of Topological Indices: Importance in Drug Discovery Research.拓扑指数的物理化学意义:在药物发现研究中的重要性。
Curr Top Med Chem. 2023;23(29):2735-2742. doi: 10.2174/1568026623666230731103309.

引用本文的文献

1
Computational approaches in drug chemistry leveraging python powered QSPR study of antimalaria compounds by using artificial neural networks.药物化学中的计算方法利用Python通过人工神经网络对抗疟化合物进行定量构效关系(QSPR)研究。
Sci Rep. 2025 Jun 2;15(1):19307. doi: 10.1038/s41598-025-01594-y.
2
Comparative study of degree, neighborhood and reverse degree based indices for drugs used in lung cancer treatment through QSPR analysis.通过定量构效关系(QSPR)分析对肺癌治疗中使用药物的基于度、邻域和逆度的指标进行比较研究。
Sci Rep. 2025 Jan 29;15(1):3639. doi: 10.1038/s41598-025-88044-x.
3
On analysis of phthalocyanine network through statistical method.

本文引用的文献

1
A python based algorithmic approach to optimize sulfonamide drugs via mathematical modeling.基于 Python 的算法通过数学建模来优化磺胺类药物。
Sci Rep. 2024 May 28;14(1):12264. doi: 10.1038/s41598-024-62819-0.
2
Motif-Aware miRNA-Disease Association Prediction via Hierarchical Attention Network.通过分层注意力网络进行基序感知的miRNA-疾病关联预测
IEEE J Biomed Health Inform. 2024 Jul;28(7):4281-4294. doi: 10.1109/JBHI.2024.3383591. Epub 2024 Jul 2.
3
Molecular structural modeling and physical characteristics of anti-breast cancer drugs via some novel topological descriptors and regression models.
通过统计方法对酞菁网络进行分析。
Sci Rep. 2024 Dec 28;14(1):31362. doi: 10.1038/s41598-024-82819-4.
通过一些新型拓扑描述符和回归模型对抗乳腺癌药物进行分子结构建模和物理特性研究
Curr Res Struct Biol. 2024 Feb 29;7:100134. doi: 10.1016/j.crstbi.2024.100134. eCollection 2024.
4
Dual-channel hypergraph convolutional network for predicting herb-disease associations.双通道超图卷积网络用于预测草药-疾病关联。
Brief Bioinform. 2024 Jan 22;25(2). doi: 10.1093/bib/bbae067.
5
TCMBank: bridges between the largest herbal medicines, chemical ingredients, target proteins, and associated diseases with intelligence text mining.中医知识库(TCMBank):通过智能文本挖掘在最大的草药、化学成分、靶蛋白及相关疾病之间搭建桥梁。
Chem Sci. 2023 Aug 8;14(39):10684-10701. doi: 10.1039/d3sc02139d. eCollection 2023 Oct 11.
6
Mathematical modeling and topological graph description of dominating David derived networks based on edge partitions.基于边划分的支配大卫派生网络的数学建模与拓扑图描述。
Sci Rep. 2023 Sep 13;13(1):15159. doi: 10.1038/s41598-023-42340-6.
7
Physicochemical Significance of Topological Indices: Importance in Drug Discovery Research.拓扑指数的物理化学意义:在药物发现研究中的重要性。
Curr Top Med Chem. 2023;23(29):2735-2742. doi: 10.2174/1568026623666230731103309.
8
iGRLDTI: an improved graph representation learning method for predicting drug-target interactions over heterogeneous biological information network.iGRLDTI:一种改进的图表示学习方法,用于预测异构生物信息网络中的药物-靶标相互作用。
Bioinformatics. 2023 Aug 1;39(8). doi: 10.1093/bioinformatics/btad451.
9
Updated mortality and causes of death in 2020-2021 in people with HIV: a multicenter study in France.2020-2021 年法国多中心研究:艾滋病毒感染者的更新死亡率和死因。
AIDS. 2023 Nov 1;37(13):2007-2013. doi: 10.1097/QAD.0000000000003645. Epub 2023 Jul 7.
10
3D graph neural network with few-shot learning for predicting drug-drug interactions in scaffold-based cold start scenario.基于图神经网络的少样本学习方法预测骨架结构药物从头开始的药物相互作用。
Neural Netw. 2023 Aug;165:94-105. doi: 10.1016/j.neunet.2023.05.039. Epub 2023 May 25.