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利用微扰神经网络势对凝聚相系统的电场响应进行机器学习。

Machine learning the electric field response of condensed phase systems using perturbed neural network potentials.

作者信息

Joll Kit, Schienbein Philipp, Rosso Kevin M, Blumberger Jochen

机构信息

Department of Physics and Astronomy and Thomas Young Centre, University College London, London, UK.

Department of Physics, Imperial College London, South Kensington, London, UK.

出版信息

Nat Commun. 2024 Sep 18;15(1):8192. doi: 10.1038/s41467-024-52491-3.

DOI:10.1038/s41467-024-52491-3
PMID:39294144
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11411082/
Abstract

The interaction of condensed phase systems with external electric fields is of major importance in a myriad of processes in nature and technology, ranging from the field-directed motion of cells (galvanotaxis), to geochemistry and the formation of ice phases on planets, to field-directed chemical catalysis and energy storage and conversion systems including supercapacitors, batteries and solar cells. Molecular simulation in the presence of electric fields would give important atomistic insight into these processes but applications of the most accurate methods such as ab-initio molecular dynamics (AIMD) are limited in scope by their computational expense. Here we introduce Perturbed Neural Network Potential Molecular Dynamics (PNNP MD) to push back the accessible time and length scales of such simulations. We demonstrate that important dielectric properties of liquid water including the field-induced relaxation dynamics, the dielectric constant and the field-dependent IR spectrum can be machine learned up to surprisingly high field strengths of about 0.2 V Å without loss in accuracy when compared to ab-initio molecular dynamics. This is remarkable because, in contrast to most previous approaches, the two neural networks on which PNNP MD is based are exclusively trained on molecular configurations sampled from zero-field MD simulations, demonstrating that the networks not only interpolate but also reliably extrapolate the field response. PNNP MD is based on rigorous theory yet it is simple, general, modular, and systematically improvable allowing us to obtain atomistic insight into the interaction of a wide range of condensed phase systems with external electric fields.

摘要

凝聚相系统与外部电场的相互作用在自然和技术的众多过程中至关重要,范围涵盖从细胞的场导向运动(电趋性)、地球化学以及行星上冰相的形成,到场导向化学催化以及包括超级电容器、电池和太阳能电池在内的能量存储与转换系统。在电场存在的情况下进行分子模拟,将为这些过程提供重要的原子层面见解,但诸如从头算分子动力学(AIMD)等最精确方法的应用,因其计算成本而在范围上受到限制。在此,我们引入微扰神经网络势分子动力学(PNNP MD),以拓展此类模拟可及的时间和长度尺度。我们证明,与从头算分子动力学相比,液态水的重要介电性质,包括场诱导弛豫动力学、介电常数和场依赖红外光谱,在高达约0.2 V Å的惊人高场强下都可以通过机器学习获得,且精度无损。这很显著,因为与大多数先前方法不同,PNNP MD所基于的两个神经网络仅在从零场MD模拟采样的分子构型上进行训练,这表明这些网络不仅能插值,还能可靠地外推场响应。PNNP MD基于严格理论,却简单、通用、模块化且可系统改进,使我们能够获得关于广泛凝聚相系统与外部电场相互作用的原子层面见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe4a/11411082/7c0433af378d/41467_2024_52491_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe4a/11411082/374bdab0f146/41467_2024_52491_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe4a/11411082/dda56e774948/41467_2024_52491_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe4a/11411082/ef875c7a88c2/41467_2024_52491_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe4a/11411082/96d1e4b5acbe/41467_2024_52491_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe4a/11411082/7c0433af378d/41467_2024_52491_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe4a/11411082/374bdab0f146/41467_2024_52491_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe4a/11411082/dda56e774948/41467_2024_52491_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe4a/11411082/ef875c7a88c2/41467_2024_52491_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe4a/11411082/96d1e4b5acbe/41467_2024_52491_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fe4a/11411082/7c0433af378d/41467_2024_52491_Fig5_HTML.jpg

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