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中国威海金海滩采集的三崎真蛤肠道内容物中分离得到的一株纤维素降解菌,命名为威海假交替单胞菌(Roseobacter weihaiensis)sp. nov.

Roseobacter weihaiensis sp. nov., a cellulose-degrading bacterium isolated from intestinal content of Nipponacmea schrenckii collected from golden beach in Weihai, China.

机构信息

Marine College, Shandong University, Weihai, 264209, China.

出版信息

Antonie Van Leeuwenhoek. 2024 Sep 28;118(1):12. doi: 10.1007/s10482-024-02009-0.

Abstract

A Gram-staining-negative, dark pink, rod-shaped, amastigote and cellulose-degrading strain, designated H9, was isolated from intestinal contents of Nipponacmea schrenckii. The isolate was able to grow at 4-42 °C (optimum, 25 °C), at pH 6.5-9.0 (optimum, pH 7.0), and with 0.0-11.0% (w/v) NaCl (optimum, 3.0-5.0%). Phylogenetic analysis of the 16S rRNA gene sequence suggested that isolate H9 belongs to the genus Roseobacter, neighboring Roseobacter insulae YSTF-M11, Roseobacter cerasinus AI77 and Roseobacter ponti MM-7, and the pairwise sequence showed the highest similarity of 99.1% to Roseobacter insulae YSTF-M11. The major fatty acid was summed feature 8 (Cω7c and/or Cω6c; 81.08%). The predominant respiratory quinone was Q-10. The polar lipids consisted of phosphatidylcholine, phosphatidylglycerol, an unknown lipid, and a small amount of an unknown phospholipid. The genome of strain H9 was 5,351,685 bp in length, and the DNA G + C content was 59.8%. The average amino acid identity (AAI), average nucleotide identity (ANI), and digital DNA hybridization (dDDH) values between strain H9 and closely related strains were 63.4-76.8%, 74.7-78.8%, and 13.4-19.7%, respectively. On the basis of the phenotypic, chemical taxonomic, and phylogenetic data, it is suggested that strain H9 should represent a novel species in the genus Roseobacter, for which the name Roseobacter weihaiensis sp. nov. is proposed. The type strain is H9 (= KCTC 82507 = MCCC 1K04354).

摘要

一株革兰氏染色阴性、暗粉色、杆状、动基体和纤维素降解菌,命名为 H9,从日本对虾肠道内容物中分离得到。该分离株能够在 4-42°C(最适温度 25°C)、pH 6.5-9.0(最适 pH 7.0)和 0.0-11.0%(w/v)NaCl(最适 3.0-5.0%)的条件下生长。16S rRNA 基因序列的系统发育分析表明,分离株 H9 属于玫瑰杆菌属,与 YSTF-M11 岛玫瑰杆菌、蜡状玫瑰杆菌和庞蒂氏玫瑰杆菌相邻,其序列相似性最高为 99.1%,与 YSTF-M11 岛玫瑰杆菌相似。主要脂肪酸为 summed feature 8(Cω7c 和/或 Cω6c;81.08%)。主要呼吸醌为 Q-10。极性脂类由磷脂酰胆碱、磷脂酰甘油、一种未知脂质和少量未知磷脂组成。菌株 H9 的基因组大小为 5351685bp,GC 含量为 59.8%。菌株 H9 与密切相关菌株的平均氨基酸同一性(AAI)、平均核苷酸同一性(ANI)和数字 DNA 杂交(dDDH)值分别为 63.4-76.8%、74.7-78.8%和 13.4-19.7%。基于表型、化学分类和系统发育数据,建议菌株 H9 代表玫瑰杆菌属的一个新种,命名为威海玫瑰杆菌。模式菌株为 H9(=KCTC 82507=MCCC 1K04354)。

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