Haghiri Shahed, Viquez Rojas Claudia, Bhat Sriram, Isayev Olexandr, Slipchenko Lyudmila
Department of Chemistry, Purdue University, 560 Oval Drive, West Lafayette, Indiana 47907-2084, United States.
Department of Computer Science, The University of Texas at Dallas, 800 W. Campbell Road, Richardson, Texas 75080, United States.
J Chem Theory Comput. 2024 Oct 22;20(20):9138-9147. doi: 10.1021/acs.jctc.4c01052. Epub 2024 Oct 1.
Deep learning Neural Networks (NN) have been developed in the field of molecular modeling for the purpose of circumventing the high computational cost of quantum-mechanical calculations while rivaling their accuracies. Although these networks have found great success, they generally lack the ability to accurately describe long-range interactions, which makes them unusable for extended molecular systems. Herein, we provide a method for partially retraining the deep learning general-use neural network ANI, in which the long-range interactions are represented via atomic electrostatic potentials. The electrostatic potentials, generated with polarizable effective fragment potentials (EFP), are used as an additional input feature for the network. This new ANI/EFP network can predict solute-solvent interaction energies on a trained data set with a kcal/mol accuracy. It also shows promise in predicting the interaction energies of a solute in solvent environments that have not been included in a training data set. The proposed protocol can be taken as an example and further developed, leading to highly accurate and transferable neural network potentials capable of handling long-range interactions and extended molecular systems.
深度学习神经网络(NN)已在分子建模领域得到发展,旨在规避量子力学计算的高计算成本,同时媲美其准确性。尽管这些网络取得了巨大成功,但它们通常缺乏准确描述长程相互作用的能力,这使得它们无法用于扩展分子系统。在此,我们提供了一种对深度学习通用神经网络ANI进行部分再训练的方法,其中长程相互作用通过原子静电势来表示。由可极化有效片段势(EFP)生成的静电势被用作网络的额外输入特征。这个新的ANI/EFP网络能够在训练数据集上以千卡/摩尔的精度预测溶质 - 溶剂相互作用能。它在预测未包含在训练数据集中的溶剂环境中溶质的相互作用能方面也显示出前景。所提出的方案可作为一个范例并进一步发展,从而产生能够处理长程相互作用和扩展分子系统的高精度且可转移的神经网络势。