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用于从……去除花粉DNA的表面消毒方法评估

Assessment of Surface Sterilisation Approaches for the Removal of Pollen DNA from .

作者信息

McGreig Sam, Pufal Hollie, Conyers Chris, Jones Eleanor P, Haynes Edward

机构信息

Fera Science Limited, York YO41 1LZ, UK.

School of Natural and Environmental Sciences, University of Newcastle, Newcastle NE1 7RU, UK.

出版信息

Insects. 2024 Sep 24;15(10):732. doi: 10.3390/insects15100732.

Abstract

Dietary analysis of herbivorous insects relies on successfully eliminating surface contamination. If this cannot be performed reliably, then it will not be possible to differentiate between plants that the insect is feeding on and plants the insect has been in contact with, either directly or via pollen. Methods in the literature often use bleach and alcohol washes to remove contamination. We perform a controlled metabarcoding baseline study on a herbivorous, xylem-feeding insect, the Meadow Spittlebug (), using Oxford Nanopore Technologies (ONT) sequencing, and identify possible contamination that persists after washes. Despite the reported success of methods in the literature, we find that contamination is still present, leading to possible false-positive results. We hypothesise that pollen is the main source of contamination, its robust nature making it difficult to remove, and conduct a further three experiments with the goal of removing pollen from the surface of . This study investigates the effectiveness of robust bleach/Tween/alcohol washes, sterile gut excision (including combined with Distel application), and ultraviolet light as alternative sterilisation approaches. Overall, our findings indicate that we are unable to remove surface contamination and still detect signals that may originate in the gut. In no experiment did we unequivocally detect plant DNA that originated in the gut.

摘要

食草昆虫的饮食分析依赖于成功消除表面污染。如果无法可靠地做到这一点,那么就不可能区分昆虫正在取食的植物和昆虫直接或通过花粉接触过的植物。文献中的方法通常使用漂白剂和酒精清洗来去除污染。我们使用牛津纳米孔技术(ONT)测序,对一种以木质部为食的食草昆虫草地沫蝉进行了一项对照元条形码基线研究,并识别了清洗后仍存在的可能污染。尽管文献中报道了这些方法的成功,但我们发现污染仍然存在,这可能导致假阳性结果。我们假设花粉是主要污染源,其坚固的性质使其难以去除,并进行了另外三个实验,目的是从草地沫蝉的表面去除花粉。本研究调查了强力漂白剂/吐温/酒精清洗、无菌肠道切除(包括与迪斯特尔联合应用)和紫外线作为替代消毒方法的有效性。总体而言,我们的研究结果表明,我们无法去除表面污染,仍然能检测到可能起源于肠道的信号。在任何实验中,我们都没有明确检测到起源于草地沫蝉肠道的植物DNA。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5a14/11508802/dac38f7a88b4/insects-15-00732-g001.jpg

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