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四肽缩合物的氨基酸依赖性相平衡和材料特性

Amino acid-dependent phase equilibrium and material properties of tetrapeptide condensates.

作者信息

Zhang Yi, Prasad Ramesh, Su Siyuan, Lee Daesung, Zhou Huan-Xiang

机构信息

Department of Chemistry, University of Illinois Chicago, Chicago, IL 60607, USA.

Department of Physics, University of Illinois Chicago, Chicago, IL 60607, USA.

出版信息

Cell Rep Phys Sci. 2024 Oct 16;5(10). doi: 10.1016/j.xcrp.2024.102218. Epub 2024 Sep 23.

Abstract

The rules of how amino acids dictate the physical properties of biomolecular condensates are still incomplete. Here, we study condensates formed by tetrapeptides of the form XXssXX. Eight peptides form four types of condensates at different concentrations and pHs: droplets (X = F, L, M, P, V, and A), amorphous dense liquids (X = L, M, P, V, and A), amorphous aggregates (X = W), and gels (X = I, V, and A). The peptides exhibit differences in phase equilibrium and material properties, including a 368-fold range in the threshold concentration for phase separation and a 3,856-fold range in viscosity. All-atom molecular dynamics simulations provide physical explanations of these results. The present work also reveals widespread critical behaviors-including critical slowing down manifested by amorphous dense liquids and critical scaling obeyed by fusion speed-with broad implications for condensate functions.

摘要

氨基酸决定生物分子凝聚物物理性质的规则仍不完整。在这里,我们研究了XXssXX形式的四肽形成的凝聚物。八种肽在不同浓度和pH值下形成四种类型的凝聚物:液滴(X = F、L、M、P、V和A)、无定形致密液体(X = L、M、P、V和A)、无定形聚集体(X = W)和凝胶(X = I、V和A)。这些肽在相平衡和材料性质上表现出差异,包括相分离阈值浓度有368倍的范围,粘度有3856倍的范围。全原子分子动力学模拟为这些结果提供了物理解释。目前的工作还揭示了广泛存在的临界行为,包括无定形致密液体表现出的临界减慢以及融合速度所遵循的临界标度,这对凝聚物的功能具有广泛影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cc59/11542723/1a711f4d513a/nihms-2030174-f0002.jpg

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