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从日本鹤冈大豆田土壤中分离出的三种（菌株）的基因组序列。

Genome sequences of three isolated from the soil of soybean field in Tsuruoka, Japan.

作者信息

Sato Ryuki, Saito Rena, Takeda Tomoki, Sasaki Nobuhiro, Yuzawa Satoshi, Saito Natsumi, Arakawa Kazuharu

机构信息

Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, Japan.

Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Kanagawa, Japan.

出版信息

Microbiol Resour Announc. 2025 Jan 16;14(1):e0105924. doi: 10.1128/mra.01059-24. Epub 2024 Nov 27.

DOI:10.1128/mra.01059-24
PMID:39601520
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11737033/
Abstract

are Gram-positive bacteria typically found in the soil, with very large genomes and high GC content, and are known to produce a wide range of secondary metabolites. We isolated and sequenced the genomes of three bacteria from the soil of soybean field in Tsuruoka, Japan.

摘要

是革兰氏阳性菌，通常存在于土壤中，基因组非常大且GC含量高，并且已知能产生多种次生代谢产物。我们从日本鹤冈大豆田的土壤中分离并测序了三种细菌的基因组。

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本文引用的文献

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Genus Streptomyces: Recent advances for biotechnological purposes.链霉菌属：生物技术应用的最新进展。
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sp. nov., an actinomycete isolated from compost of (Lam.).新种，放线菌，从 （Lam.）的堆肥中分离得到。
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Completing bacterial genome assemblies with multiplex MinION sequencing.使用多重 MinION 测序完成细菌基因组组装。
Microb Genom. 2017 Sep 14;3(10):e000132. doi: 10.1099/mgen.0.000132. eCollection 2017 Oct.
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DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.DFAST：一个灵活的原核生物基因组注释管道，用于更快地发布基因组。
Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713.
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Canu: scalable and accurate long-read assembly via adaptive -mer weighting and repeat separation.Canu：通过自适应k-mer加权和重复序列分离实现可扩展且准确的长读长序列拼接
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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
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A roadmap for natural product discovery based on large-scale genomics and metabolomics.基于大规模基因组学和代谢组学的天然产物发现路线图。
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