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芥菜干旱条件下生长调控因子的全基因组鉴定与表达分析

Genome‑wide identifcation and expression analysis of growth-regulating factors under drought in Brassica juncea.

作者信息

Zhang Yuling, Jiang Huanhuan, Liang Fenghao, Yang Bin, Wang Lulu, Tang Rong, Lei Shaolin, Xiao Huagui, Zhang Chao

机构信息

Oil Research Institute of Guizhou Province, Guizhou Academy of Agricultural Sciences, Guiyang, 550006, China.

出版信息

Sci Rep. 2024 Dec 1;14(1):29835. doi: 10.1038/s41598-024-80941-x.

Abstract

Growth-regulating factors (GRFs) are plant-specific transcription factors involved in the regulation of plant growth, development, and abiotic stress processes. However, the function of Brassica juncea (L.) Czern & Coss GRFs remain largely unknown. In this study, 34 BjGRF genes were identified in B. juncea. BjGRF members of the same subfamily were found to share a similar motif composition and gene structure. In total, 663 cis-acting elements were found in the promoter regions of BjGRF genes, which were related to light response, hormone response, environmental stresses, and plant growth/development. Additionally, 48 pairs of segmental duplication genes were identified during gene duplication events, and no tandemly duplicated genes were identified. qRT-PCR analysis showed that the 34 BjGRF genes were primarily expressed in the roots, followed by the leaves. Furthermore, the 10 BjGRF genes were screened in response to drought stress, and the expression patterns of the genes were relatively consistent, with a maximum expression level at 3 or 24 h, and the selected BjGRF03 and BjGRF32 might be involved in drought stress. This preliminary study clarifies the response of the BjGRF gene family to drought stress and provides ideas for further analyses of the biological functions of BjGRF genes.

摘要

生长调节因子(GRFs)是植物特有的转录因子,参与植物生长、发育和非生物胁迫过程的调控。然而,芥菜(Brassica juncea (L.) Czern & Coss)GRFs的功能在很大程度上仍不清楚。在本研究中,在芥菜中鉴定出34个BjGRF基因。发现同一亚家族的BjGRF成员具有相似的基序组成和基因结构。在BjGRF基因的启动子区域共发现663个顺式作用元件,这些元件与光响应、激素响应、环境胁迫和植物生长/发育相关。此外,在基因复制事件中鉴定出48对片段重复基因,未鉴定出串联重复基因。qRT-PCR分析表明,34个BjGRF基因主要在根中表达,其次是叶。此外,筛选出10个响应干旱胁迫的BjGRF基因,这些基因的表达模式相对一致,在3小时或24小时达到最大表达水平,所选的BjGRF03和BjGRF32可能参与干旱胁迫。这项初步研究阐明了BjGRF基因家族对干旱胁迫的响应,为进一步分析BjGRF基因的生物学功能提供了思路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f06b/11609294/18050593a54a/41598_2024_80941_Fig1_HTML.jpg

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