• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于机器学习的代谢组学和基因图谱用于预测多种脑表型。

Machine learning based metabolomic and genetic profiles for predicting multiple brain phenotypes.

作者信息

Zhang Xueli, Huang Yu, Liu Shunming, Ma Shuo, Li Min, Zhu Zhuoting, Wang Wei, Zhang Xiayin, Liu Jiahao, Tang Shulin, Hu Yijun, Ge Zongyuan, Yu Honghua, He Mingguang, Shang Xianwen

机构信息

Department of Ophthalmology, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, 510080, China.

Medical Research Institute, Guangdong Provincial People's Hospital (Guangdong Academy of Medical Sciences), Southern Medical University, Guangzhou, China.

出版信息

J Transl Med. 2024 Dec 3;22(1):1098. doi: 10.1186/s12967-024-05868-3.

DOI:10.1186/s12967-024-05868-3
PMID:39627804
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11613467/
Abstract

BACKGROUND

It is unclear regarding the association between metabolomic state/genetic risk score(GRS) and brain volumes and how much of variance of brain volumes is attributable to metabolomic state or GRS.

METHODS

Our analysis included 8635 participants (52.5% females) aged 40-70 years at baseline from the UK Biobank. Metabolomic profiles were assessed using nuclear magnetic resonance at baseline (between 2006 and 2010). Brain volumes were measured using magnetic resonance imaging between 2014 and 2019. Machine learning was used to generate metabolomic state and GRS for each of 21 brain phenotypes.

RESULTS

Individuals in the top 20% of metabolomic state had 2.4-35.7% larger volumes of 21 individual brain phenotypes compared to those in the bottom 20% while the corresponding number for GRS ranged from 1.5 to 32.8%. The proportion of variance of brain volumes (R [2]) explained by the corresponding metabolomic state ranged from 2.2 to 19.4%, and the corresponding number for GRS ranged from 0.8 to 8.7%. Metabolomic state provided no or minimal additional prediction values of brain volumes to age and sex while GRS provided moderate additional prediction values (ranging from 0.8 to 8.8%). No significant interplay between metabolomic state and GRS was observed, but the association between metabolomic state and some regional brain volumes was stronger in men or younger individuals. Individual metabolomic profiles including lipids and fatty acids were strong predictors of brain volumes.

CONCLUSIONS

In conclusion, metabolomic state is strongly associated with multiple brain volumes but provides minimal additional prediction value of brain volumes to age + sex. Although GRS is a weaker contributor to brain volumes than metabolomic state, it provides moderate additional prediction value of brain volumes to age + sex. Our findings suggest metabolomic state and GRS are important predictors for multiple brain phenotypes.

摘要

背景

代谢组学状态/遗传风险评分(GRS)与脑容量之间的关联尚不清楚,且脑容量的多少变异可归因于代谢组学状态或GRS也不明确。

方法

我们的分析纳入了英国生物银行中8635名基线年龄在40 - 70岁的参与者(52.5%为女性)。在基线时(2006年至2010年之间)使用核磁共振评估代谢组学谱。在2014年至2019年之间使用磁共振成像测量脑容量。使用机器学习为21种脑表型中的每一种生成代谢组学状态和GRS。

结果

代谢组学状态处于前20%的个体与处于后20%的个体相比,21种个体脑表型的体积大2.4% - 35.7%,而GRS的相应数值范围为1.5%至32.8%。相应代谢组学状态解释的脑容量方差比例(R[2])范围为2.2%至19.4%,GRS的相应数值范围为0.8%至8.7%。代谢组学状态对脑容量的额外预测值相对于年龄和性别而言没有或极少,而GRS提供了中等程度的额外预测值(范围为0.8%至8.8%)。未观察到代谢组学状态与GRS之间有显著的相互作用,但代谢组学状态与某些区域脑容量之间的关联在男性或较年轻个体中更强。包括脂质和脂肪酸在内的个体代谢组学谱是脑容量的强预测指标。

结论

总之,代谢组学状态与多种脑容量密切相关,但对脑容量相对于年龄+性别的额外预测价值极小。虽然GRS对脑容量的贡献比代谢组学状态弱,但它对脑容量相对于年龄+性别的额外预测价值中等。我们的研究结果表明代谢组学状态和GRS是多种脑表型的重要预测指标。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/d1058d25836b/12967_2024_5868_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/2709a0635fde/12967_2024_5868_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/146271bbae2e/12967_2024_5868_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/afddcd3559a6/12967_2024_5868_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/e26499e81c56/12967_2024_5868_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/d9595a91e9fa/12967_2024_5868_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/249aaab027a4/12967_2024_5868_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/d1058d25836b/12967_2024_5868_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/2709a0635fde/12967_2024_5868_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/146271bbae2e/12967_2024_5868_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/afddcd3559a6/12967_2024_5868_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/e26499e81c56/12967_2024_5868_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/d9595a91e9fa/12967_2024_5868_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/249aaab027a4/12967_2024_5868_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0666/11613467/d1058d25836b/12967_2024_5868_Fig7_HTML.jpg

相似文献

1
Machine learning based metabolomic and genetic profiles for predicting multiple brain phenotypes.基于机器学习的代谢组学和基因图谱用于预测多种脑表型。
J Transl Med. 2024 Dec 3;22(1):1098. doi: 10.1186/s12967-024-05868-3.
2
Untargeted metabolomic analysis of plasma from relapsing-remitting multiple sclerosis patients reveals changes in metabolites associated with structural changes in brain.对复发缓解型多发性硬化症患者血浆进行非靶向代谢组学分析,揭示了与大脑结构变化相关的代谢物变化。
Brain Res. 2020 Apr 1;1732:146589. doi: 10.1016/j.brainres.2019.146589. Epub 2019 Dec 6.
3
Circulating Metabolome and White Matter Hyperintensities in Women and Men.女性和男性的循环代谢组与脑白质高信号
Circulation. 2022 Apr 5;145(14):1040-1052. doi: 10.1161/CIRCULATIONAHA.121.056892. Epub 2022 Jan 20.
4
NMR metabolomic modeling of age and lifespan: A multicohort analysis.基于多队列分析的 NMR 代谢组学建模与年龄和寿命的关系
Aging Cell. 2024 Jul;23(7):e14164. doi: 10.1111/acel.14164. Epub 2024 Apr 18.
5
Machine-learning-based plasma metabolomic profiles for predicting long-term complications of cirrhosis.基于机器学习的血浆代谢组学图谱用于预测肝硬化的长期并发症。
Hepatology. 2025 Jan 1;81(1):168-180. doi: 10.1097/HEP.0000000000000879. Epub 2024 Apr 17.
6
Nuclear magnetic resonance-based metabolomics with machine learning for predicting progression from prediabetes to diabetes.基于磁共振的代谢组学与机器学习预测从糖尿病前期到糖尿病的进展。
Elife. 2024 Sep 20;13:RP98709. doi: 10.7554/eLife.98709.
7
Using Machine Learning to Identify Metabolomic Signatures of Pediatric Chronic Kidney Disease Etiology.利用机器学习识别儿科慢性肾脏病病因的代谢组学特征。
J Am Soc Nephrol. 2022 Feb;33(2):375-386. doi: 10.1681/ASN.2021040538. Epub 2022 Jan 11.
8
Metabolomic-genomic prediction can improve prediction accuracy of breeding values for malting quality traits in barley.代谢组学-基因组预测可以提高大麦酿造品质性状的育种值预测准确性。
Genet Sel Evol. 2023 Sep 5;55(1):61. doi: 10.1186/s12711-023-00835-w.
9
Individual characteristics outperform resting-state fMRI for the prediction of behavioral phenotypes.个体特征在预测行为表型方面优于静息态 fMRI。
Commun Biol. 2024 Jun 26;7(1):771. doi: 10.1038/s42003-024-06438-5.
10
Machine Learning and Pathway Analysis-Based Discovery of Metabolomic Markers Relating to Chronic Pain Phenotypes.基于机器学习和通路分析的代谢组学标志物发现与慢性疼痛表型相关。
Int J Mol Sci. 2022 May 3;23(9):5085. doi: 10.3390/ijms23095085.

本文引用的文献

1
Novel insights into brain lipid metabolism in Alzheimer's disease: Oligodendrocytes and white matter abnormalities.阿尔茨海默病脑脂质代谢的新见解:少突胶质细胞与白质异常
FEBS Open Bio. 2024 Feb;14(2):194-216. doi: 10.1002/2211-5463.13661. Epub 2023 Jun 26.
2
Association of type 1 diabetes and age at diagnosis of type 2 diabetes with brain volume and risk of dementia in the UK Biobank: A prospective cohort study of community-dwelling participants.英国生物银行中1型糖尿病及2型糖尿病诊断年龄与脑容量和痴呆风险的关联:一项针对社区居住参与者的前瞻性队列研究
Diabet Med. 2023 Feb;40(2):e14966. doi: 10.1111/dme.14966. Epub 2022 Oct 31.
3
Metabolomic profiles predict individual multidisease outcomes.
代谢组学特征可预测个体多种疾病的结局。
Nat Med. 2022 Nov;28(11):2309-2320. doi: 10.1038/s41591-022-01980-3. Epub 2022 Sep 22.
4
Brain lipidomics: From functional landscape to clinical significance.脑脂质组学:从功能图谱到临床意义。
Sci Adv. 2022 Sep 16;8(37):eadc9317. doi: 10.1126/sciadv.adc9317.
5
Metabolic profile-based subgroups can identify differences in brain volumes and brain iron deposition.基于代谢特征的亚组可以识别脑容量和脑铁沉积的差异。
Diabetes Obes Metab. 2023 Jan;25(1):121-131. doi: 10.1111/dom.14853. Epub 2022 Sep 21.
6
Association of a wide range of individual chronic diseases and their multimorbidity with brain volumes in the UK Biobank: A cross-sectional study.英国生物银行中多种个体慢性病及其共病与脑容量的关联:一项横断面研究。
EClinicalMedicine. 2022 Apr 28;47:101413. doi: 10.1016/j.eclinm.2022.101413. eCollection 2022 May.
7
Linking interindividual variability in brain structure to behaviour.将大脑结构的个体间差异与行为联系起来。
Nat Rev Neurosci. 2022 May;23(5):307-318. doi: 10.1038/s41583-022-00584-7. Epub 2022 Apr 1.
8
Association of a wide range of chronic diseases and apolipoprotein E4 genotype with subsequent risk of dementia in community-dwelling adults: A retrospective cohort study.社区居住成年人中多种慢性疾病和载脂蛋白E4基因型与随后发生痴呆症风险的关联:一项回顾性队列研究。
EClinicalMedicine. 2022 Mar 13;45:101335. doi: 10.1016/j.eclinm.2022.101335. eCollection 2022 Mar.
9
Circulating Metabolome and White Matter Hyperintensities in Women and Men.女性和男性的循环代谢组与脑白质高信号
Circulation. 2022 Apr 5;145(14):1040-1052. doi: 10.1161/CIRCULATIONAHA.121.056892. Epub 2022 Jan 20.
10
The Association of Age at Diagnosis of Hypertension With Brain Structure and Incident Dementia in the UK Biobank.高血压发病年龄与英国生物库大脑结构和痴呆发病的关联。
Hypertension. 2021 Nov;78(5):1463-1474. doi: 10.1161/HYPERTENSIONAHA.121.17608. Epub 2021 Oct 4.