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基于TP53突变型多发性骨髓瘤中差异表达的自噬相关基因的预后模型及免疫浸润细胞图谱

Prognostic model and immune-infiltrating cell landscape based on differentially expressed autophagy-related genes in TP53-mutated multiple myeloma.

作者信息

Zheng Yan-Hua, Shen Hong-Yuan, Chen Xiang, Feng Juan, Gao Guang-Xun

机构信息

Department of Hematology, Xijing Hospital, Fourth Military Medical University (Air Force Medical University), Xi'an, Shaanxi, China.

Department of Hematology, Tangdu Hospital, Fourth Military Medical University (Air Force Medical University), Xi'an, Shaanxi, China.

出版信息

Arch Med Sci. 2021 Jul 27;20(5):1619-1630. doi: 10.5114/aoms/140293. eCollection 2024.

Abstract

INTRODUCTION

Autophagy functions as a prosurvival mechanism in multiple myeloma (MM). The objective of this research was to establish an autophagy-related gene (ARG) signature for predicting the survival outcomes of MM patients with TP53 mutations.

MATERIAL AND METHODS

Information about MM patients with TP53 mutations was downloaded from the Gene Expression Omnibus (GEO) database. Cox proportional hazard regression was employed to determine the independent prognostic ARG and construct a risk signature. Time-dependent receiver-operating characteristic (tROC) curve analysis was used to explore the predictive accuracy of the prognostic model. A nomogram was constructed to give a more precise prediction of the probability of 5-year, 8-year and 10-year overall survival (OS). In addition, we used the CIBERSORT algorithm to explore the distribution difference of 22 immune-infiltrating cells.

RESULTS

Three differentially expressed ARGs (, , ) were finally incorporated to construct the risk model. Area under the curve (AUC) values of the corresponding tROC curve for 5-year, 8-year and 10-year OS were 0.735, 0.686 and 0.662, respectively. Multiple myeloma patients were categorized into high and low-risk groups in accordance with the median threshold value (-1.724549). An ARG-based risk score model was an independent prognostic element correlated with OS, giving an hazard ratio (HR) of 3.29 (95% CI 2.35-4.60, < 0.001). Thirteen immune infiltrating cells were found to have distribution differences between the two groups.

CONCLUSIONS

We established a three-ARG risk signature which manifested an independent prognostic factor. The nomogram was testified to perform well in forecasting the long-term survival of TP53-mutated MM patients.

摘要

引言

自噬在多发性骨髓瘤(MM)中发挥着促生存机制的作用。本研究的目的是建立一种自噬相关基因(ARG)特征,用于预测TP53突变的MM患者的生存结局。

材料与方法

从基因表达综合数据库(GEO)下载TP53突变的MM患者信息。采用Cox比例风险回归确定独立的预后ARG并构建风险特征。使用时间依赖的受试者操作特征(tROC)曲线分析来探索预后模型的预测准确性。构建列线图以更精确地预测5年、8年和10年总生存(OS)概率。此外,我们使用CIBERSORT算法探索22种免疫浸润细胞的分布差异。

结果

最终纳入三个差异表达的ARG( , , )来构建风险模型。5年、8年和10年OS对应的tROC曲线的曲线下面积(AUC)值分别为0.735、0.686和0.662。根据中位数阈值(-1.724549)将多发性骨髓瘤患者分为高风险和低风险组。基于ARG的风险评分模型是与OS相关的独立预后因素,风险比(HR)为3.29(95%CI 2.35 - 4.60,<0.001)。发现两组之间有13种免疫浸润细胞存在分布差异。

结论

我们建立了一种三ARG风险特征,其表现为独立的预后因素。列线图被证明在预测TP53突变的MM患者的长期生存方面表现良好。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3615/11623155/c576b53ebd89/AMS-20-5-140293-g001.jpg

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