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解码差异表达基因以鉴定结核病中潜在的免疫相关生物标志物:一种综合生物信息学方法。

Decoding differentially expressed genes to identify potential immunity associated biomarkers in Tuberculosis: An integrative bioinformatics approach.

作者信息

Datta Ankur, Gupta Divyanshi, Waryani Diya, C George Priya Doss

机构信息

Laboratory of Integrative Genomics, Department of Integrative Biology, School of BioSciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, 632014, India.

出版信息

Biochem Biophys Rep. 2024 Nov 22;40:101870. doi: 10.1016/j.bbrep.2024.101870. eCollection 2024 Dec.

Abstract

Tuberculosis (TB) poses a significant threat to the Indian population, with India accounting for 20 % of the global TB cases. The current study aims to identify molecular biomarkers for better diagnostics by comparing the transcriptome signatures of healthy individuals against TB-affected individuals. Next-generation sequencing (NGS) tools were used to identify critical differentially expressed genes (DEGs). 302 DEGs were identified based on a logFC threshold of |3| and adjusted p-value < 0.05. STRING database was used to plot the interactions amongst the 302 DEGs. The DEGs were functionally annotated, highlighting numerous physiological functions affected due to the dysregulation of the identified hub genes. , , , and were the hub genes identified and observed to dysregulate crucial physiological functions. has been implicated in the progression of TB in various populations, and the findings of this study will enable researchers to improve the current landscape of diagnostics for TB.

摘要

结核病(TB)对印度人口构成重大威胁,印度的结核病病例占全球的20%。当前研究旨在通过比较健康个体与结核病患者的转录组特征,识别用于更好诊断的分子生物标志物。使用下一代测序(NGS)工具来识别关键的差异表达基因(DEG)。基于|3|的logFC阈值和调整后的p值<0.05,鉴定出302个DEG。使用STRING数据库绘制302个DEG之间的相互作用。对这些DEG进行功能注释,突出显示由于已识别的枢纽基因失调而受影响的众多生理功能。 、 、 、 和 是所识别的枢纽基因,并观察到它们会使关键生理功能失调。 已被证明在不同人群的结核病进展中起作用,本研究结果将使研究人员能够改善当前结核病的诊断格局。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b5df/11625171/ddb0c48a82f7/ga1.jpg

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