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非对称谐波双阱中的隧穿时间及其在生物大分子电子转移中的应用

Tunneling Times in an Asymmetric Harmonic Double-Well with Application to Electron Transfers in Biological Macromolecules.

作者信息

Costa Monteiro João Marcos, Drigo Filho Elso

机构信息

Department of Physics, Institute of Biosciences, Humanities and Exact Sciences, São Paulo State University (UNESP), São José do Rio Preto, 15054-000 São Paulo, Brazil.

出版信息

ACS Omega. 2024 Dec 9;9(50):49832-49838. doi: 10.1021/acsomega.4c08622. eCollection 2024 Dec 17.

DOI:10.1021/acsomega.4c08622
PMID:39713657
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11656229/
Abstract

Tunneling times were calculated in electron transfer processes using an asymmetric harmonic double-well model. The simplicity of a direct variational calculation in the approximate solution of the Schrödinger equation, along with the interpretation of tunneling times within the probabilistic framework of a two-level system, allows for the efficient and accurate determination of tunneling times with minimal computational cost. These calculations were applied to electron transfer processes in the study of the photosynthetic reaction center and in the context of catalysis in UV-induced DNA lesion repair and are in agreement with the experimental, computational, and theoretical results with which they were compared. It was seen that the donor-acceptor distance needed to be adjusted for closer agreement between the calculated and experimentally observed times. However, the adjusted values for this distance remain close to those reported in the literature.

摘要

在电子转移过程中,使用非对称谐波双阱模型计算隧穿时间。薛定谔方程近似解中直接变分计算的简单性,以及在两能级系统概率框架内对隧穿时间的解释,使得能够以最小的计算成本高效且准确地确定隧穿时间。这些计算应用于光合反应中心研究中的电子转移过程以及紫外线诱导的DNA损伤修复中的催化背景下,并且与所比较的实验、计算和理论结果一致。可以看出,为了使计算时间与实验观测时间更接近一致,需要调整供体 - 受体距离。然而,该距离的调整值仍与文献报道的值相近。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67a/11656229/4208d36b2c52/ao4c08622_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67a/11656229/963493debf63/ao4c08622_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67a/11656229/4208d36b2c52/ao4c08622_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67a/11656229/963493debf63/ao4c08622_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b67a/11656229/4208d36b2c52/ao4c08622_0002.jpg

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本文引用的文献

1
Electron Tunneling in Biology: When Does it Matter?生物学中的电子隧穿:何时重要?
ACS Omega. 2023 Jul 20;8(30):27355-27365. doi: 10.1021/acsomega.3c02719. eCollection 2023 Aug 1.
2
Protein Dynamics and Enzymatic Catalysis.蛋白质动力学与酶催化。
J Phys Chem B. 2023 Mar 30;127(12):2649-2660. doi: 10.1021/acs.jpcb.3c00477. Epub 2023 Mar 21.
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High Yield of B-Side Electron Transfer at 77 K in the Photosynthetic Reaction Center Protein from .来自……的光合反应中心蛋白在77K时B侧电子转移的高产率 。 你提供的原文似乎不完整,“from”后面缺少具体内容。
J Phys Chem B. 2022 Nov 10;126(44):8940-8956. doi: 10.1021/acs.jpcb.2c05905. Epub 2022 Oct 31.
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High-Pressure Scanning Tunneling Microscopy.高分辨扫描隧道显微镜
Chem Rev. 2021 Jan 27;121(2):962-1006. doi: 10.1021/acs.chemrev.0c00429. Epub 2020 Dec 8.
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Primary electron transfer in Rhodobacter sphaeroides R-26 reaction centers under dehydration conditions.脱水条件下球形红杆菌 R-26 反应中心的原初电子转移。
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Photolyase: Dynamics and electron-transfer mechanisms of DNA repair.光解酶:DNA修复的动力学与电子转移机制
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Quantum effects in biology: golden rule in enzymes, olfaction, photosynthesis and magnetodetection.生物学中的量子效应:酶、嗅觉、光合作用和磁探测中的黄金法则。
Proc Math Phys Eng Sci. 2017 May;473(2201):20160822. doi: 10.1098/rspa.2016.0822. Epub 2017 May 31.
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