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在组织发育和盐胁迫过程中对WRKY基因家族进行全基因组鉴定及表达分析。 (你提供的原文“in during tissue development and salt stress”表述似乎不完整,这里根据推测翻译,若有准确原文可进一步完善。)

Genome-wide identification and expression analysis of the WRKY gene family in during tissue development and salt stress.

作者信息

Li Jin, Wang Xi, Lu Junjie, Song Huifang, Lei Haiying, Niu Tianzeng, Liu Ake

机构信息

Department of Life Sciences, Changzhi University, Changzhi, China.

College of Life Science, Nanyang Normal University, Nanyang, China.

出版信息

Front Plant Sci. 2024 Dec 23;15:1520786. doi: 10.3389/fpls.2024.1520786. eCollection 2024.

DOI:10.3389/fpls.2024.1520786
PMID:39764231
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11700743/
Abstract

is a traditional Chinese medicinal herb rich in various bioactive secondary metabolites, such as alkaloids and flavonoids, and exhibits remarkable resistance to abiotic stress. The WRKY transcription factor (TF) family is one of the largest plant-specific TF families and plays a crucial role in plant growth, development, and responses to abiotic stress. However, a comprehensive genome-wide analysis of the WRKY gene family in has not yet been conducted. In this study, we identified 69 genes from the genome and classified them into seven distinct subfamilies based on phylogenetic analysis. Transposed duplications and dispersed duplications were found to be the primary driving forces behind the expansion of the SfWRKY family. Additionally, several -acting elements related to the stress response and hormone signaling were discovered within the promoter regions of . Transcriptomic analyses across five tissues (leaves, flowers, pods, roots, and stems) revealed that genes exhibiting high expression levels in specific tissues generally showed high expression across all the examined tissues. Coexpression network constructed based on metabolomic and transcriptomic analyses of root and pod development indicated that may play a significant role in regulating the biosynthesis of secondary metabolites during tissue development. The RT-qPCR results of gene expression analysis revealed that several genes were significantly induced in response to the accumulation of secondary metabolites or salt stress. Our study systematically analyzed WRKY TFs in , which provides valuable reference data for further studies on the key roles of genes in growth development as well as their responses under salt stress conditions.

摘要

是一种富含多种生物活性次生代谢产物(如生物碱和黄酮类化合物)的传统中草药,并且对非生物胁迫表现出显著抗性。WRKY转录因子(TF)家族是最大的植物特异性TF家族之一,在植物生长、发育以及对非生物胁迫的响应中发挥着关键作用。然而,尚未对[植物名称]的WRKY基因家族进行全面的全基因组分析。在本研究中,我们从[植物名称]基因组中鉴定出69个WRKY基因,并基于系统发育分析将它们分为七个不同的亚家族。转座重复和分散重复被发现是SfWRKY家族扩张的主要驱动力。此外,在[植物名称]的启动子区域内发现了几个与胁迫响应和激素信号相关的顺式作用元件。对五个组织(叶、花、豆荚、根和茎)的转录组分析表明,在特定组织中高表达的基因通常在所有检测组织中都表现出高表达。基于根和豆荚发育的代谢组学和转录组学分析构建的共表达网络表明,[植物名称]可能在组织发育过程中调节次生代谢产物的生物合成中发挥重要作用。基因表达分析的RT-qPCR结果显示,几个[植物名称]基因在次生代谢产物积累或盐胁迫响应中被显著诱导。我们的研究系统地分析了[植物名称]中的WRKY转录因子,为进一步研究[植物名称]基因在生长发育中的关键作用及其在盐胁迫条件下的响应提供了有价值的参考数据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/cc3545481201/fpls-15-1520786-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/aa8dbe24030c/fpls-15-1520786-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/10f03d33721a/fpls-15-1520786-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/49c97a5106f2/fpls-15-1520786-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/218d45f0dd52/fpls-15-1520786-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/67d504ae06fc/fpls-15-1520786-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/d861fa9e6b50/fpls-15-1520786-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/19d83659a411/fpls-15-1520786-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/cc3545481201/fpls-15-1520786-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/aa8dbe24030c/fpls-15-1520786-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/10f03d33721a/fpls-15-1520786-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/49c97a5106f2/fpls-15-1520786-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/218d45f0dd52/fpls-15-1520786-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/67d504ae06fc/fpls-15-1520786-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/d861fa9e6b50/fpls-15-1520786-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/19d83659a411/fpls-15-1520786-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bdae/11700743/cc3545481201/fpls-15-1520786-g008.jpg

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