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溶菌性多糖单加氧酶活性位点铜的X射线光还原及糖类结合过程中活性位点几何结构的变化

Changes in active-site geometry on X-ray photoreduction of a lytic polysaccharide monooxygenase active-site copper and saccharide binding.

作者信息

Tandrup Tobias, Muderspach Sebastian J, Banerjee Sanchari, Santoni Gianluca, Ipsen Johan Ø, Hernández-Rollán Cristina, Nørholm Morten H H, Johansen Katja S, Meilleur Flora, Lo Leggio Leila

机构信息

Department of Chemistry, University of Copenhagen, Universitetsparken 5, 2100-DK, Copenhagen, Denmark.

ESRF, Structural Biology Group, 71 avenue des Martyrs, 38027 Grenoble cedex, France.

出版信息

IUCrJ. 2022 Aug 17;9(Pt 5):666-681. doi: 10.1107/S2052252522007175. eCollection 2022 Sep 1.

DOI:10.1107/S2052252522007175
PMID:36071795
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9438499/
Abstract

The recently discovered lytic polysaccharide monooxygenases (LPMOs) are Cu-containing enzymes capable of degrading polysaccharide substrates oxidatively. The generally accepted first step in the LPMO reaction is the reduction of the active-site metal ion from Cu to Cu. Here we have used a systematic diffraction data collection method to monitor structural changes in two AA9 LPMOs, one from (AA9_A) and one from (AA9_A), as the active-site Cu is photoreduced in the X-ray beam. For AA9_A, the protein produced in two different recombinant systems was crystallized to probe the effect of post-translational modifications and different crystallization conditions on the active site and metal photoreduction. We can recommend that crystallographic studies of AA9 LPMOs wishing to address the Cu form use a total X-ray dose below 3 × 10 Gy, while the Cu form can be attained using 1 × 10 Gy. In all cases, we observe the transition from a hexa-coordinated Cu site with two solvent-facing ligands to a T-shaped geometry with no exogenous ligands, and a clear increase of the θ parameter and a decrease of the θ parameter by averages of 9.2° and 8.4°, respectively, but also a slight increase in θ. Thus, the θ and θ parameters are helpful diagnostics for the oxidation state of the metal in a His-brace protein. On binding of cello-oligosaccharides to AA9_A, regardless of the production source, the θ parameter increases, making the Cu site less planar, while the active-site Tyr-Cu distance decreases reproducibly for the Cu form. Thus, the θ increase found on copper reduction may bring AA9_A closer to an oligosaccharide-bound state and contribute to the observed higher affinity of reduced AA9_A for cellulosic substrates.

摘要

最近发现的裂解多糖单加氧酶(LPMOs)是一类含铜酶,能够氧化降解多糖底物。LPMO反应中普遍接受的第一步是活性位点金属离子从Cu(Ⅱ)还原为Cu(Ⅰ)。在这里,我们使用了一种系统的衍射数据收集方法,来监测两种AA9 LPMOs(一种来自[具体来源1](AA9_A),另一种来自[具体来源2](AA9_A))在X射线束中活性位点Cu(Ⅱ)被光还原时的结构变化。对于AA9_A,在两种不同的重组系统中产生的蛋白质被结晶,以探究翻译后修饰和不同结晶条件对活性位点和金属光还原的影响。我们建议,希望研究Cu(Ⅱ)形式的AA9 LPMOs的晶体学研究使用低于3×10 Gy的总X射线剂量,而使用1×10 Gy可以实现Cu(Ⅰ)形式。在所有情况下,我们观察到从具有两个面向溶剂配体的六配位Cu位点转变为没有外源配体的T形几何结构,并且θ参数平均明显增加9.2°,θ参数平均明显降低8.4°,但θ也略有增加。因此,θ和θ参数有助于诊断His支架蛋白中金属的氧化态。当纤维寡糖与AA9_A结合时,无论生产来源如何,θ参数都会增加,使Cu位点的平面度降低,而对于Cu(Ⅰ)形式,活性位点的Tyr-Cu距离会可重复地减小。因此,在铜还原时发现的θ增加可能使AA9_A更接近寡糖结合状态,并有助于观察到还原后的AA9_A对纤维素底物具有更高的亲和力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f649/9438499/64205b871eae/m-09-00666-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f649/9438499/52f45bd640b1/m-09-00666-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f649/9438499/72fe6e7a8a98/m-09-00666-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f649/9438499/a947c65cb6b7/m-09-00666-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f649/9438499/39c381b0c35a/m-09-00666-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f649/9438499/2537143934a3/m-09-00666-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f649/9438499/64205b871eae/m-09-00666-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f649/9438499/52f45bd640b1/m-09-00666-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f649/9438499/72fe6e7a8a98/m-09-00666-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f649/9438499/a947c65cb6b7/m-09-00666-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f649/9438499/39c381b0c35a/m-09-00666-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f649/9438499/2537143934a3/m-09-00666-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f649/9438499/64205b871eae/m-09-00666-fig6.jpg

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