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一份关于从胸痛患者临床记录中提取症状发作日期和时间的初步报告。

A Pilot Report on Extracting Symptom Onset Date and Time from Clinical Notes in Patients Presenting with Chest Pain.

作者信息

George Anjaly, Maisa Aashrith, Dreisbach Caitlin, Suba Sukardi

机构信息

Goergen Institute for Data Science, University of Rochester.

School of Nursing, University of Rochester.

出版信息

medRxiv. 2024 Dec 31:2024.12.26.24319658. doi: 10.1101/2024.12.26.24319658.

DOI:10.1101/2024.12.26.24319658
PMID:39802780
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11722505/
Abstract

Acute coronary syndrome (ACS) is an acute heart disease that often evolves rapidly. In ACS patients presenting with no-ST-segment elevation (NSTE-ACS), the timing of symptom onset pre-hospital may inform the disease stage and prognosis. We pilot-tested two off-the-shelf natural language processing (NLP) pipelines, namely and (), to extract date and time (DateTime) information of patient-reported chest pain symptoms from electronic health records (EHR) clinical notes. We included three types of clinical notes (N=71): History and Physical (n=49), Emergency Department Screening (n=3), and Triage Notes (n=19). All notes were manually annotated for the true DateTime of symptom onset. returned matching DateTime outputs in 36 notes (50.7%), while returned zero matched outputs. performed better than , although it was still suboptimal. Both pipelines require constant refinement and custom improvements. Methods for a large-scale, automated DateTime extraction from EHR clinical notes further investigation.

摘要

急性冠状动脉综合征(ACS)是一种常迅速发展的急性心脏病。在无ST段抬高的ACS患者(NSTE - ACS)中,院前症状发作时间可提示疾病阶段和预后。我们对两个现成的自然语言处理(NLP)管道,即 和 ()进行了试点测试,以从电子健康记录(EHR)临床记录中提取患者报告的胸痛症状的日期和时间(日期时间)信息。我们纳入了三种类型的临床记录(N = 71):病史和体格检查(n = 49)、急诊科筛查(n = 3)和分诊记录(n = 19)。所有记录均针对症状发作的真实日期时间进行了人工标注。 在36份记录(50.7%)中返回了匹配的日期时间输出,而 返回了零匹配输出。 表现优于 ,尽管仍未达到最佳状态。两个管道都需要不断完善和定制改进。从EHR临床记录中大规模自动提取日期时间的方法有待进一步研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c493/11722505/1bd54fb1a964/nihpp-2024.12.26.24319658v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c493/11722505/1bd54fb1a964/nihpp-2024.12.26.24319658v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c493/11722505/1bd54fb1a964/nihpp-2024.12.26.24319658v1-f0001.jpg

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