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二聚体辅助的(不)饱和脂肪酸脱羧生成烯烃的机制。

Dimer-assisted mechanism of (un)saturated fatty acid decarboxylation for alkene production.

机构信息

Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas 13083-100, Brazil.

Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC 27695-7622.

出版信息

Proc Natl Acad Sci U S A. 2023 May 30;120(22):e2221483120. doi: 10.1073/pnas.2221483120. Epub 2023 May 22.

Abstract

The enzymatic decarboxylation of fatty acids (FAs) represents an advance toward the development of biological routes to produce drop-in hydrocarbons. The current mechanism for the P450-catalyzed decarboxylation has been largely established from the bacterial cytochrome P450 OleT. Herein, we describe OleTP, a poly-unsaturated alkene-producing decarboxylase that outrivals the functional properties of the model enzyme and exploits a distinct molecular mechanism for substrate binding and chemoselectivity. In addition to the high conversion rates into alkenes from a broad range of saturated FAs without dependence on high salt concentrations, OleTP can also efficiently produce alkenes from unsaturated (oleic and linoleic) acids, the most abundant FAs found in nature. OleTP performs carbon-carbon cleavage by a catalytic itinerary that involves hydrogen-atom transfer by the heme-ferryl intermediate Compound I and features a hydrophobic cradle at the distal region of the substrate-binding pocket, not found in OleT, which is proposed to play a role in the productive binding of long-chain FAs and favors the rapid release of products from the metabolism of short-chain FAs. Moreover, it is shown that the dimeric configuration of OleTP is involved in the stabilization of the A-A' helical motif, a second-coordination sphere of the substrate, which contributes to the proper accommodation of the aliphatic tail in the distal and medial active-site pocket. These findings provide an alternative molecular mechanism for alkene production by P450 peroxygenases, creating new opportunities for biological production of renewable hydrocarbons.

摘要

脂肪酸(FAs)的酶脱羧代表了朝着开发生产可替代的烃类生物途径发展的一个进步。目前,P450 催化脱羧的机制在很大程度上是从细菌细胞色素 P450 OleT 中建立的。在此,我们描述了 OleTP,一种多不饱和烯烃产生的脱羧酶,其功能特性优于模型酶,并利用了一种独特的分子机制进行底物结合和化学选择性。除了能够在低盐浓度下,从广泛的饱和脂肪酸高效地转化为烯烃,OleTP 还可以从不饱和(油酸和亚油酸)脂肪酸高效地生产烯烃,不饱和脂肪酸是自然界中最丰富的脂肪酸。OleTP 通过涉及血红素-铁中间体化合物 I 的氢原子转移的催化途径进行碳-碳裂解,并在底物结合口袋的远端区域具有疏水性摇篮,在 OleT 中未发现该区域,据推测,该区域在长链 FAs 的有效结合中发挥作用,并有利于短链 FAs 代谢产物的快速释放。此外,还表明 OleTP 的二聚体构型参与了 A-A' 螺旋基序的稳定,该基序是底物的第二配位球,有助于将脂肪链在远端和中间活性口袋中适当容纳。这些发现为 P450 过氧化物酶产生烯烃提供了另一种分子机制,为可再生碳氢化合物的生物生产创造了新的机会。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/046f/10235961/e26ad7d0bd6c/pnas.2221483120fig01.jpg

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