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番茄中()基因家族的全基因组鉴定与表达谱分析

Genome-Wide Identification and Expression Profile of () Gene Family in L.

作者信息

Bian Xinyi, Wu Tingkai, Qiang Runrun, Deng Zhi, Rehman Fazal, Han Qiyu, Xu Dong, Yuan Yuan, Wang Xiaobo, An Zewei, Wu Wenguan, Wang Huasen, Cheng Han

机构信息

College of Horticulture Science, Zhejiang Agriculture and Forestry University, Hangzhou 311300, China.

State Key Laboratory of Tropical Crop Breeding, Sanya Institute, Rubber Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya 572025, China.

出版信息

Int J Mol Sci. 2025 Jan 18;26(2):798. doi: 10.3390/ijms26020798.

DOI:10.3390/ijms26020798
PMID:39859518
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11765665/
Abstract

The biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), which are essential for sesquiterpenes and triterpenes, respectively, is primarily governed by the mevalonate pathway, wherein () plays a pivotal role. This study identified eight members of the FPS gene family in , designated -, through bioinformatics analysis, revealing their distribution across several chromosomes and a notable tandem gene cluster. The genes exhibited strong hydrophilic properties and key functional motifs crucial for enzyme activity. An in-depth analysis of the genes highlighted their significant involvement in isoprenoid metabolism and lipid biosynthesis, with expression patterns influenced by hormones such as jasmonic acid and salicylic acid. Tissue-specific analysis demonstrated that certain genes, particularly , , and , showed elevated expression levels in latex, suggesting their critical roles in terpenoid biosynthesis. Furthermore, subcellular localization studies have indicated that these proteins are primarily found in the cytoplasm, reinforcing their function in metabolic processes. These findings provide a foundational understanding of the genes in , including their gene structures, conserved domains, and evolutionary relationships. This study elucidates the potential roles of these genes in response to environmental factors, hormone signaling, and stress adaptation, thereby paving the way for future functional analyses aimed at exploring the regulation of terpenoid biosynthesis and enhancing stress tolerance in this species.

摘要

异戊烯基二磷酸(IPP)和二甲基烯丙基二磷酸(DMAPP)的生物合成分别是倍半萜和三萜所必需的,主要由甲羟戊酸途径控制,其中()起着关键作用。本研究通过生物信息学分析在()中鉴定出FPS基因家族的八个成员,命名为-,揭示了它们在几条染色体上的分布以及一个显著的串联基因簇。这些基因表现出很强的亲水性和对酶活性至关重要的关键功能基序。对这些基因的深入分析突出了它们在类异戊二烯代谢和脂质生物合成中的重要参与,其表达模式受茉莉酸和水杨酸等激素影响。组织特异性分析表明,某些基因,特别是、和,在乳胶中表达水平升高,表明它们在萜类生物合成中起关键作用。此外,亚细胞定位研究表明这些蛋白质主要存在于细胞质中,强化了它们在代谢过程中的功能。这些发现为()中这些基因的基因结构、保守结构域和进化关系提供了基本认识。本研究阐明了这些基因在响应环境因素、激素信号和应激适应方面的潜在作用,从而为未来旨在探索萜类生物合成调控和增强该物种应激耐受性的功能分析铺平了道路。

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