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组织病理学和蛋白质组学在预测高级别浆液性卵巢癌铂类药物反应方面具有协同作用。

Histopathology and proteomics are synergistic for high-grade serous ovarian cancer platinum response prediction.

作者信息

Kilim Oz, Olar Alex, Biricz András, Madaras Lilla, Pollner Péter, Szállási Zoltán, Sztupinszki Zsofia, Csabai István

机构信息

Eötvös Loránd University, Department of Physics of Complex Systems, Budapest, Hungary.

Semmelweis University, Data-Driven Health Division of National Laboratory for Health Security, Health Services Management Training Centre, Budapest, Hungary.

出版信息

NPJ Precis Oncol. 2025 Jan 26;9(1):27. doi: 10.1038/s41698-025-00808-w.

DOI:10.1038/s41698-025-00808-w
PMID:39863682
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11762732/
Abstract

Patients with High-Grade Serous Ovarian Cancer (HGSOC) exhibit varied responses to treatment, with 20-30% showing de novo resistance to platinum-based chemotherapy. While hematoxylin-eosin (H&E)-stained pathological slides are used for routine diagnosis of cancer type, they may also contain diagnostically useful information about treatment response. Our study demonstrates that combining H&E-stained whole slide images (WSIs) with proteomic signatures using a multimodal deep learning framework significantly improves the prediction of platinum response in both discovery and validation cohorts. This method outperforms the Homologous Recombination Deficiency (HRD) score in predicting platinum response and overall patient survival. Our study suggests that histology and proteomics contain complementary information about biological processes determining response to first line platinum treatment in HGSOC. This integrative approach has the potential to improve personalized treatment and provide insights into the therapeutic vulnerabilities of HGSOC.

摘要

高级别浆液性卵巢癌(HGSOC)患者对治疗的反应各不相同,20%-30%的患者对铂类化疗表现出原发性耐药。苏木精-伊红(H&E)染色的病理切片虽用于癌症类型的常规诊断,但也可能包含有关治疗反应的诊断有用信息。我们的研究表明,使用多模态深度学习框架将H&E染色的全切片图像(WSIs)与蛋白质组学特征相结合,可显著提高在发现队列和验证队列中对铂反应的预测。该方法在预测铂反应和患者总体生存方面优于同源重组缺陷(HRD)评分。我们的研究表明,组织学和蛋白质组学包含有关决定HGSOC一线铂治疗反应的生物学过程的互补信息。这种综合方法有潜力改善个性化治疗,并深入了解HGSOC的治疗脆弱性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/73bc/11762732/3e6f8658296c/41698_2025_808_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/73bc/11762732/804b963507c7/41698_2025_808_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/73bc/11762732/9a38640ab395/41698_2025_808_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/73bc/11762732/e6ff53ad635d/41698_2025_808_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/73bc/11762732/3e6f8658296c/41698_2025_808_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/73bc/11762732/804b963507c7/41698_2025_808_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/73bc/11762732/9a38640ab395/41698_2025_808_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/73bc/11762732/e6ff53ad635d/41698_2025_808_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/73bc/11762732/3e6f8658296c/41698_2025_808_Fig4_HTML.jpg

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本文引用的文献

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Prediction of homologous recombination deficiency from routine histology with attention-based multiple instance learning in nine different tumor types.基于注意力的多实例学习在 9 种不同肿瘤类型中从常规组织学预测同源重组缺陷。
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Learning generalizable AI models for multi-center histopathology image classification.学习用于多中心组织病理学图像分类的通用人工智能模型。
NPJ Precis Oncol. 2024 Jul 19;8(1):151. doi: 10.1038/s41698-024-00652-4.
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Towards a general-purpose foundation model for computational pathology.
迈向计算病理学的通用基础模型。
Nat Med. 2024 Mar;30(3):850-862. doi: 10.1038/s41591-024-02857-3. Epub 2024 Mar 19.
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Proteogenomic analysis of enriched HGSOC tumor epithelium identifies prognostic signatures and therapeutic vulnerabilities.富集的高级别浆液性卵巢癌肿瘤上皮细胞的蛋白质基因组分析确定了预后特征和治疗弱点。
NPJ Precis Oncol. 2024 Mar 13;8(1):68. doi: 10.1038/s41698-024-00519-8.
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Transferable and Interpretable Treatment Effectiveness Prediction for Ovarian Cancer via Multimodal Deep Learning.基于多模态深度学习的卵巢癌可转移和可解释治疗效果预测。
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Ovarian cancer beyond imaging: integration of AI and multiomics biomarkers.卵巢癌的影像学之外:人工智能与多组学生物标志物的整合。
Eur Radiol Exp. 2023 Sep 13;7(1):50. doi: 10.1186/s41747-023-00364-7.
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Deep Learning for Detecting BRCA Mutations in High-Grade Ovarian Cancer Based on an Innovative Tumor Segmentation Method From Whole Slide Images.基于全切片图像创新肿瘤分割方法的深度学习在高级别卵巢癌中检测 BRCA 突变的应用。
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Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer.化疗耐药性高级别浆液性卵巢癌的蛋白质基因组分析。
Cell. 2023 Aug 3;186(16):3476-3498.e35. doi: 10.1016/j.cell.2023.07.004.
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