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Semantic annotation for computational pathology: multidisciplinary experience and best practice recommendations.
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Tailoring pretext tasks to improve self-supervised learning in histopathologic subtype classification of lung adenocarcinomas.
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From whole-slide image to biomarker prediction: end-to-end weakly supervised deep learning in computational pathology.
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Multimodal integration strategies for clinical application in oncology.
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MERGE: Multi-faceted Hierarchical Graph-based GNN for Gene Expression Prediction from Whole Slide Histopathology Images.
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GastritisMIL: An interpretable deep learning model for the comprehensive histological assessment of chronic gastritis.
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Histopathology-based protein multiplex generation using deep learning.
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Rapid generation of long, chemically modified pegRNAs for prime editing.
Nat Biotechnol. 2024 Sep 30. doi: 10.1038/s41587-024-02394-x.
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A population-level digital histologic biomarker for enhanced prognosis of invasive breast cancer.
Nat Med. 2024 Jan;30(1):85-97. doi: 10.1038/s41591-023-02643-7. Epub 2023 Nov 27.
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Leakage and the reproducibility crisis in machine-learning-based science.
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SGCL: Spatial guided contrastive learning on whole-slide pathological images.
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A visual-language foundation model for pathology image analysis using medical Twitter.
Nat Med. 2023 Sep;29(9):2307-2316. doi: 10.1038/s41591-023-02504-3. Epub 2023 Aug 17.
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Machine learning for cryosection pathology predicts the 2021 WHO classification of glioma.
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Algorithmic fairness in artificial intelligence for medicine and healthcare.
Nat Biomed Eng. 2023 Jun;7(6):719-742. doi: 10.1038/s41551-023-01056-8. Epub 2023 Jun 28.
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Machine learning in computational histopathology: Challenges and opportunities.
Genes Chromosomes Cancer. 2023 Sep;62(9):540-556. doi: 10.1002/gcc.23177. Epub 2023 Jun 14.
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Robust and data-efficient generalization of self-supervised machine learning for diagnostic imaging.
Nat Biomed Eng. 2023 Jun;7(6):756-779. doi: 10.1038/s41551-023-01049-7. Epub 2023 Jun 8.

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