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植物自噬研究:挑战与推荐方法

Studying plant autophagy: challenges and recommended methodologies.

作者信息

Qi Hua, Wang Yao, Bao Yan, Bassham Diane C, Chen Liang, Chen Qin-Fang, Hou Suiwen, Hwang Inhwan, Huang Li, Lai Zhibing, Li Faqiang, Liu Yule, Qiu Rongliang, Wang Hao, Wang Pengwei, Xie Qingjun, Zeng Yonglun, Zhuang Xiaohong, Gao Caiji, Jiang Liwen, Xiao Shi

机构信息

Guangdong Laboratory for Lingnan Modern Agriculture, Guangdong Provincial Key Laboratory of Agricultural & Rural Pollution Abatement and Environmental Safety, College of Natural Resources and Environment, South China Agricultural University, Guangzhou, 510642, China.

State Key Laboratory of Biocontrol, Guangdong Provincial Key Laboratory of Plant Resources, School of Life Sciences, Sun Yat-Sen University, Guangzhou, 510275, China.

出版信息

Adv Biotechnol (Singap). 2023 Oct 26;1(4):2. doi: 10.1007/s44307-023-00002-8.

DOI:10.1007/s44307-023-00002-8
PMID:39883189
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11727600/
Abstract

In plants, autophagy is a conserved process by which intracellular materials, including damaged proteins, aggregates, and entire organelles, are trafficked to the vacuole for degradation, thus maintaining cellular homeostasis. The past few decades have seen extensive research into the core components of the central autophagy machinery and their physiological roles in plant growth and development as well as responses to biotic and abiotic stresses. Moreover, several methods have been established for monitoring autophagic activities in plants, and these have greatly facilitated plant autophagy research. However, some of the methodologies are prone to misuse or misinterpretation, sometimes casting doubt on the reliability of the conclusions being drawn about plant autophagy. Here, we summarize the methods that are widely used for monitoring plant autophagy at the physiological, microscopic, and biochemical levels, including discussions of their advantages and limitations, to provide a guide for studying this important process.

摘要

在植物中,自噬是一个保守的过程,通过该过程,包括受损蛋白质、聚集体和整个细胞器在内的细胞内物质被运输到液泡进行降解,从而维持细胞内稳态。在过去几十年里,人们对自噬核心机制的关键组分及其在植物生长发育以及对生物和非生物胁迫响应中的生理作用进行了广泛研究。此外,已经建立了几种监测植物自噬活性的方法,这些方法极大地促进了植物自噬研究。然而,其中一些方法容易被误用或误解,有时会让人对有关植物自噬得出的结论的可靠性产生怀疑。在此,我们总结了在生理、微观和生化水平上广泛用于监测植物自噬的方法,包括对其优缺点的讨论,以为研究这一重要过程提供指导。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f188/11727600/ad495e355ab2/44307_2023_2_Fig6_HTML.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f188/11727600/0fca2902d642/44307_2023_2_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f188/11727600/ad495e355ab2/44307_2023_2_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f188/11727600/ce62e0000994/44307_2023_2_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f188/11727600/f911df4d17ee/44307_2023_2_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f188/11727600/921337bbead8/44307_2023_2_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f188/11727600/1b91cb1e1eb4/44307_2023_2_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f188/11727600/0fca2902d642/44307_2023_2_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f188/11727600/ad495e355ab2/44307_2023_2_Fig6_HTML.jpg

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Autophagy deficiency confers freezing tolerance in Arabidopsis thaliana.自噬缺陷赋予拟南芥抗冻能力。
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本文引用的文献

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A non-canonical role of ATG8 in Golgi recovery from heat stress in plants.ATG8 在植物热应激中从高尔基体恢复的非经典作用。
Nat Plants. 2023 May;9(5):749-765. doi: 10.1038/s41477-023-01398-w. Epub 2023 Apr 20.
2
The plant unique ESCRT component FREE1 regulates autophagosome closure.植物特有的 ESCRT 成分 FREE1 调节自噬体闭合。
Nat Commun. 2023 Mar 30;14(1):1768. doi: 10.1038/s41467-023-37185-6.
3
Ufmylation reconciles salt stress-induced unfolded protein responses via ER-phagy in .泛素样修饰通过 ER 自噬使. 中的盐胁迫诱导的未折叠蛋白反应协调一致。
在表达GFP-ATG8自噬体标记的拟南芥幼苗中,非生物胁迫下的自噬分析
Curr Protoc. 2025 Jun;5(6):e70166. doi: 10.1002/cpz1.70166.
4
Autophagy restricts tomato fruit ripening via a general role in ethylene repression.自噬通过在乙烯抑制中的一般作用来限制番茄果实成熟。
New Phytol. 2025 Jun;246(6):2392-2404. doi: 10.1111/nph.70127. Epub 2025 May 7.
Proc Natl Acad Sci U S A. 2023 Jan 31;120(5):e2208351120. doi: 10.1073/pnas.2208351120. Epub 2023 Jan 25.
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ORP2A mediates ER-autophagosomal membrane contact sites and regulates PI3P in plant autophagy.ORP2A 介导内质网-自噬体膜接触位点,并调节植物自噬中的 PI3P。
Proc Natl Acad Sci U S A. 2022 Oct 25;119(43):e2205314119. doi: 10.1073/pnas.2205314119. Epub 2022 Oct 17.
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14-3-3 proteins contribute to autophagy by modulating SINAT-mediated degradation of ATG13.14-3-3 蛋白通过调节 SINAT 介导的 ATG13 降解来促进自噬。
Plant Cell. 2022 Nov 29;34(12):4857-4876. doi: 10.1093/plcell/koac273.
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Plant UVRAG interacts with ATG14 to regulate autophagosome maturation and geminivirus infection.植物UVRAG与ATG14相互作用以调节自噬体成熟和双生病毒感染。
New Phytol. 2022 Nov;236(4):1358-1374. doi: 10.1111/nph.18437. Epub 2022 Sep 6.
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Type one protein phosphatase regulates fixed-carbon starvation-induced autophagy in Arabidopsis.一种类型的蛋白磷酸酶调节拟南芥中固定碳饥饿诱导的自噬。
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Arabidopsis flowering integrator SOC1 transcriptionally regulates autophagy in response to long-term carbon starvation.拟南芥开花整合因子 SOC1 通过转录调控自噬响应长期碳饥饿。
J Exp Bot. 2022 Nov 2;73(19):6589-6599. doi: 10.1093/jxb/erac298.
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Cargo receptors and adaptors for selective autophagy in plant cells.植物细胞中选择性自噬的货物受体和衔接蛋白。
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