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全基因组序列、代谢谱分析和功能研究表明,[具体名称未给出]是一种有前景的形成生物膜的益生菌,具有显著的抗氧化、抗菌和抗生物膜潜力。

Complete genome sequence, metabolic profiling and functional studies reveal is a promising biofilm-forming probiotic with significant antioxidant, antibacterial, and antibiofilm potential.

作者信息

Patra Sinjini, Pradhan Biswaranjan, Roychowdhury Anasuya

机构信息

Biochemistry and Cell Biology Laboratory, School of Basic Sciences, Indian Institute of Technology Bhubaneswar, Odisha, India.

S. K. Dash Center of Excellence of Biosciences and Engineering & Technology (SKBET), Indian Institute of Technology Bhubaneswar, Odisha, India.

出版信息

Front Microbiol. 2025 Mar 20;16:1535388. doi: 10.3389/fmicb.2025.1535388. eCollection 2025.

DOI:10.3389/fmicb.2025.1535388
PMID:40182284
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11965632/
Abstract

BACKGROUND

Probiotics restore microbial balance and prevent gut-inflammation. Therefore, finding out novel probiotic strains is a demand. As gut-microbe, benefits of are established. However, strain-specific detailed studies are limited. Here, we illustrate probiotic attributes of novel for its potential application as food-supplement and/or therapeutic to improve gut-health.

METHODS

Whole genome sequencing (WGS) and phylogenetic analysis confirm the strain as . To establish probiotic properties, acid-bile tolerance, auto-aggregation, cell-surface-hydrophobicity, biofilm-formation, and adhesion-assays are performed. To ensure safety attributes, antibiotic-susceptibility, hemolytic, DNase, trypan-blue, and MTT assays are done. ABTS, DPPH, superoxide, hydroxyl free radical scavenging assays are used to determine anti-oxidant potential. Antibacterial assays, including co-culture assay with pathogen and pathogenic biofilm-inhibition assays, are performed to explore antibacterial efficacy. To characterize metabolic-profile of -derived cell-free-supernatant (CFS), HRMS analysis are carried out. Consequently, WGS-analyses predict potential molecular associations related to functional outcomes.

RESULTS

We find a remarkable fast-growing strain that shows acid and bile tolerance (>60% survival rate), indicating promising gut-sustainability. High auto-aggregation capacity (>80%), robust cell-surface hydrophobicity (>85%), and adhesion efficacy to Caco-2 cells illustrate significant potential of for gut colonization. Fascinatingly, is able to form biofilm within 24 h ( < 0.0001), rare among strains, indicating the potential of the strain for efficient stay in the gut. The strain ensures safety attributes. -WGS analysis recognizes probiotic-specific determinants, predicts genomic stability, identifies orthologous-clusters for diverse functions, and predicts metabolites and bacteriocins. HRMS-studies with CFS further validate the presence of diverse beneficial metabolites with antimicrobial and immunomodulatory potential. shows significant antioxidant properties in ABTS (>60%), DPPH (>10 U/mL), superoxide (>70%), and hydroxyl free radical scavenging assays (>70%). Further, shows antimicrobial activities against Gram-positive Methicillin-resistant and Gram-negative multidrug-resistant clinical strains enterotoxigenic and . Anti- effect of is prominent ( < 0.0001). Most interestingly, -CFS inhibits -biofilm ( < 0.0001), again rare among strains.

CONCLUSION

is a novel, fast-growing, biofilm-forming probiotic with significant antioxidant, antibacterial, and anti-biofilm potentials, suggesting the promising applications of for combating pathogenic biofilms and improving gut-health. However, further studies would facilitate their potential applications.

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/d560502c8350/fmicb-16-1535388-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/b2dd72703e96/fmicb-16-1535388-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/b44a5cdf2b99/fmicb-16-1535388-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/3edb2fe631ed/fmicb-16-1535388-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/fdab43d955be/fmicb-16-1535388-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/d2e2a3ec805c/fmicb-16-1535388-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/0e502841a066/fmicb-16-1535388-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/414b43592795/fmicb-16-1535388-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/e1eb571e057f/fmicb-16-1535388-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/d560502c8350/fmicb-16-1535388-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/b2dd72703e96/fmicb-16-1535388-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/b44a5cdf2b99/fmicb-16-1535388-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/3edb2fe631ed/fmicb-16-1535388-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/fdab43d955be/fmicb-16-1535388-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/d2e2a3ec805c/fmicb-16-1535388-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/0e502841a066/fmicb-16-1535388-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/414b43592795/fmicb-16-1535388-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/e1eb571e057f/fmicb-16-1535388-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8add/11965632/d560502c8350/fmicb-16-1535388-g009.jpg
摘要

背景

益生菌可恢复微生物平衡并预防肠道炎症。因此,寻找新型益生菌菌株很有必要。作为肠道微生物,其益处已得到证实。然而,针对特定菌株的详细研究有限。在此,我们阐述了新型[菌株名称]的益生菌特性,以探讨其作为食品补充剂和/或治疗剂改善肠道健康的潜在应用价值。

方法

全基因组测序(WGS)和系统发育分析确定该菌株为[菌株名称]。为确定益生菌特性,进行了耐酸胆汁、自聚集、细胞表面疏水性、生物膜形成及黏附试验。为确保安全性,进行了抗生素敏感性、溶血、DNase、台盼蓝及MTT试验。采用ABTS、DPPH、超氧化物、羟自由基清除试验测定抗氧化潜力。进行抗菌试验,包括与病原体共培养试验和致病性生物膜抑制试验,以探究抗菌效果。为表征[菌株名称]来源的无细胞上清液(CFS)的代谢谱,进行了高分辨率质谱(HRMS)分析。因此,WGS分析预测了与功能结果相关的潜在分子关联。

结果

我们发现[菌株名称]是一种生长迅速的菌株,具有耐酸和耐胆汁能力(存活率>60%),表明其在肠道中有良好的生存能力。高自聚集能力(>80%)、强大的细胞表面疏水性(>85%)以及对Caco-2细胞的黏附效果,表明[菌株名称]在肠道定植方面具有显著潜力。有趣的是,[菌株名称]能够在24小时内形成生物膜(P<0.0001),这在[相关菌株]中较为罕见,表明该菌株在肠道中高效留存的潜力。该菌株确保了安全性。[菌株名称] -WGS分析识别出益生菌特异性决定因素,预测了基因组稳定性,鉴定了多种功能的直系同源簇,并预测了代谢产物和细菌素。对CFS的HRMS研究进一步验证了具有抗菌和免疫调节潜力的多种有益代谢产物的存在。[菌株名称]在ABTS(>60%)、DPPH(>10 U/mL)、超氧化物(>70%)和羟自由基清除试验(>70%)中表现出显著的抗氧化特性。此外,[菌株名称]对革兰氏阳性耐甲氧西林[金黄色葡萄球菌名称]和革兰氏阴性多重耐药临床菌株产肠毒素[大肠杆菌名称]和[肺炎克雷伯菌名称]具有抗菌活性。[菌株名称]的抗菌效果显著(P<0.0001)。最有趣的是,[菌株名称] -CFS抑制[铜绿假单胞菌名称]生物膜(P<0.0001),这在[相关菌株]中同样罕见。

结论

[菌株名称]是一种新型、生长迅速、形成生物膜的益生菌,具有显著的抗氧化、抗菌和抗生物膜潜力,表明[菌株名称]在对抗致病性生物膜和改善肠道健康方面具有广阔的应用前景。然而,进一步的[菌株名称]研究将有助于其潜在应用。

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