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开发对育种者友好的锈病R基因KASP标记

Developing Breeder-Friendly KASP Markers for Rust R Genes.

作者信息

Sharma Jyoti Saini, Singh Lovepreet

机构信息

Department of Plant Pathology, University of Minnesota, St. Paul, MN, USA.

Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, MN, USA.

出版信息

Methods Mol Biol. 2025;2898:273-280. doi: 10.1007/978-1-0716-4378-5_17.

DOI:10.1007/978-1-0716-4378-5_17
PMID:40198563
Abstract

The marker-assisted breeding (MAB) approach has become more convenient and time efficient with the advancement of allele-specific, cost-effective, and breeder-friendly single nucleotide polymorphism (SNP)-based kompetitive allele-specific (KASP) polymerase chain reaction (PCR) markers. Here, we describe a detailed protocol to develop KASP assays for rust resistance breeding in wheat.

摘要

随着基于等位基因特异性、经济高效且对育种者友好的单核苷酸多态性(SNP)的竞争性等位基因特异性(KASP)聚合酶链反应(PCR)标记的发展,标记辅助育种(MAB)方法变得更加便捷且节省时间。在此,我们描述了一种用于开发小麦抗锈病育种KASP检测方法的详细方案。

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Developing Breeder-Friendly KASP Markers for Rust R Genes.开发对育种者友好的锈病R基因KASP标记
Methods Mol Biol. 2025;2898:273-280. doi: 10.1007/978-1-0716-4378-5_17.
2
A robust KASP marker for selection of four pairs of linked leaf rust and stripe rust resistance genes introgressed on chromosome arm 5DS from different wheat genomes.一个用于从不同小麦基因组中导入到 5DS 染色体臂上的四个连锁叶锈病和条锈病抗性基因对的稳健 KASP 标记。
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本文引用的文献

1
QTL Mapping of Adult-Plant Resistance to Leaf and Stripe Rust in Wheat Cross SW 8588/Thatcher using the Wheat 55K SNP Array.小麦 55K SNP 芯片在 SW 8588/Thatcher 抗叶锈和条锈的成株期抗性 QTL 定位。
Plant Dis. 2019 Dec;103(12):3041-3049. doi: 10.1094/PDIS-02-19-0380-RE. Epub 2019 Oct 15.
2
Identification of a new source of stripe rust resistance Yr82 in wheat.鉴定小麦中新的条锈病抗性基因 Yr82。
Theor Appl Genet. 2019 Nov;132(11):3169-3176. doi: 10.1007/s00122-019-03416-y. Epub 2019 Aug 28.
3
Development and Validation of a Perfect KASP Marker for Fusarium Head Blight Resistance Gene in Wheat.
小麦赤霉病抗性基因完美KASP标记的开发与验证
Plant Pathol J. 2019 Jun;35(3):200-207. doi: 10.5423/PPJ.OA.01.2019.0018. Epub 2019 Jun 1.
4
Development of SNP, KASP, and SSR Markers by BSR-Seq Technology for Saturation of Genetic Linkage Map and Efficient Detection of Wheat Powdery Mildew Resistance Gene .BSR-Seq 技术开发 SNP、KASP 和 SSR 标记,用于饱和遗传连锁图谱和有效检测小麦白粉病抗性基因。
Int J Mol Sci. 2019 Feb 11;20(3):750. doi: 10.3390/ijms20030750.
5
Genome sequence of the progenitor of the wheat D genome Aegilops tauschii.小麦D基因组祖先节节麦的基因组序列。
Nature. 2017 Nov 23;551(7681):498-502. doi: 10.1038/nature24486. Epub 2017 Nov 15.
6
Identification and characterization of , a tetraploid wheat gene that confers resistance to the Ug99 stem rust race group.鉴定和表征一个四倍体小麦基因 ,该基因赋予了对 Ug99 茎锈病群组的抗性。
Proc Natl Acad Sci U S A. 2017 Nov 7;114(45):E9483-E9492. doi: 10.1073/pnas.1706277114. Epub 2017 Oct 23.
7
Rapid identification of an adult plant stripe rust resistance gene in hexaploid wheat by high-throughput SNP array genotyping of pooled extremes.通过对极端混合样本进行高通量SNP阵列基因分型快速鉴定六倍体小麦中的一个成株期抗条锈病基因
Theor Appl Genet. 2018 Jan;131(1):43-58. doi: 10.1007/s00122-017-2984-3. Epub 2017 Sep 30.
8
Characterization of a Wheat Breeders' Array suitable for high-throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivum).一种适用于六倍体面包小麦(普通小麦)全球种质高通量单核苷酸多态性基因分型的小麦育种家阵列的特征分析。
Plant Biotechnol J. 2017 Mar;15(3):390-401. doi: 10.1111/pbi.12635. Epub 2016 Nov 23.
9
Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array.利用高密度90,000单核苷酸多态性阵列对多倍体小麦基因组多样性进行表征。
Plant Biotechnol J. 2014 Aug;12(6):787-96. doi: 10.1111/pbi.12183. Epub 2014 Mar 20.
10
Clustal Omega, accurate alignment of very large numbers of sequences.Clustal Omega,用于对大量序列进行精确比对。
Methods Mol Biol. 2014;1079:105-16. doi: 10.1007/978-1-62703-646-7_6.