Wang Kun, Cheng Jiao, Chen Jing-Ru, Luo Yan-Yan, Yao Yu-Heng, Nan Li-Li
Key Laboratory of Grassland Ecosystem of Ministry of Education, College of Pratacultural Science, Gansu Agricultural University, Lanzhou, 730070, China.
Key Laboratory of Forage Germplasm Innovation and New Variety Breeding of Ministry of Agriculture and Rural Affairs (Co-sponsored by the Ministry and Gansu Province), Lanzhou, 730070, China.
BMC Genomics. 2025 Apr 18;26(1):383. doi: 10.1186/s12864-025-11575-0.
The Pyrabactin resistance 1-like proteins (PYR/PYL/RCAR) protein plays a critical regulatory role in the ABA signal transduction pathway as a direct receptor of abscisic acid (ABA). Although PYL genes have been identified in a variety of plants, the evolution and structural characteristics of these genes in alfalfa (Medicago sativa) are largely unknown. Therefore, a comprehensive bioinformatics analysis of the PYL gene family was performed in this research.
The results indicated that 41 MsPYL genes were unevenly distributed across 24 chromosomes. According to gene structure, conservative features, and phylogenetic relationships, MsPYL proteins can be divided into 6 groups, all of which have PYR/PYL/RCAR domains, and MsPYL proteins are relatively small (molecular weight 19.59 kDa to 25.31 kDa). MsPYL genes contains cis-acting elements that has functions in plant growth and development, hormone regulation, and stress response. Furthermore, transcriptome data showed that drought stress affected the MsPYL genes' expression levels in alfalfa. Tissue specificity analysis revealed that all MsPYL genes exhibited varying responses to drought, abscisic acid (ABA), salicylic acid (SA), and indole-3-acetic acid (IAA). Additionally, all MsPYL genes were expressed to different extents in both the aboveground and underground tissues following stimulation. They were induced by IAA, ABA, and SA from 6 h to 12 h, and ABA induced MsPYL4 most significantly at the 12 h mark. MsPYL4, MsPYL8, MsPYL11, and MsPYL19 were expressed only after hormone treatment.
The results of this study indicate that the MsPYL genes are closely related to stress response and provide new candidate genes for further exploration of MsPYL genes function and improvement and innovation of drought-resistant alfalfa germplasm.
类吡咯烷酮抗性1蛋白(PYR/PYL/RCAR)作为脱落酸(ABA)的直接受体,在ABA信号转导途径中发挥着关键的调控作用。尽管已在多种植物中鉴定出PYL基因,但这些基因在苜蓿(紫花苜蓿)中的进化和结构特征仍 largely 未知。因此,本研究对PYL基因家族进行了全面的生物信息学分析。
结果表明,41个MsPYL基因不均匀地分布在24条染色体上。根据基因结构、保守特征和系统发育关系,MsPYL蛋白可分为6组,所有组均具有PYR/PYL/RCAR结构域,且MsPYL蛋白相对较小(分子量为19.59 kDa至25.31 kDa)。MsPYL基因包含在植物生长发育、激素调节和应激反应中起作用的顺式作用元件。此外,转录组数据表明干旱胁迫影响苜蓿中MsPYL基因的表达水平。组织特异性分析显示,所有MsPYL基因对干旱、脱落酸(ABA)、水杨酸(SA)和吲哚 - 3 - 乙酸(IAA)均表现出不同的反应。此外,所有MsPYL基因在受到刺激后,在地上和地下组织中均有不同程度的表达。它们在6小时至12小时受到IAA、ABA和SA的诱导,且ABA在12小时时对MsPYL4的诱导最为显著。MsPYL4、MsPYL8、MsPYL11和MsPYL19仅在激素处理后表达。
本研究结果表明,MsPYL基因与应激反应密切相关,并为进一步探索MsPYL基因功能以及改良和创新抗旱苜蓿种质提供了新的候选基因。