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构建基于联合菌群的工程化生物传感器用于诊断。

Engineering coupled consortia-based biosensors for diagnostic.

作者信息

Huang Rongying, Kravchik Valeriia, Zaatry Rawan, Habib Mouna, Geva-Zatorsky Naama, Daniel Ramez

机构信息

Department of Biotechnology Technion-Israel Institute of Technology, Technion City, Haifa, Israel.

Department of Biomedical Engineering Technion-Israel Institute of Technology, Technion City, Haifa, Israel.

出版信息

Nat Commun. 2025 Apr 22;16(1):3761. doi: 10.1038/s41467-025-58996-9.

Abstract

Synthetic multicellular systems have great potential for performing complex tasks, including multi-signal detection and computation through cell-to-cell communication. However, engineering these systems is challenging, requiring precise control over the cell concentrations of distinct members and coordination of their activity. Here, we develop a bacterial consortia-based biosensor for Heme and Lactate, wherein members are coupled through a global shared quorum-sensing signal that simultaneously controls the activity of the diverse biosensing strains. The multicellular system incorporates a gene circuit that computes the minimum between each biosensor's activity and the shared signal. We evaluate three consortia configurations: one where the shared signal is externally supplied, another directly produced via an inducible gene circuit, and a third generated through an incoherent feedforward loop (IFFL) gene circuit. Among these configurations, the IFFL system, which maintains the shared signal at low and stable levels over an extended period, demonstrates improved performance and robustness against perturbations in cell populations. Finally, we examine these coupled consortia to monitor Lactate and Heme in humanized fecal samples for diagnostics.

摘要

合成多细胞系统在执行复杂任务方面具有巨大潜力,包括通过细胞间通讯进行多信号检测和计算。然而,设计这些系统具有挑战性,需要精确控制不同成员的细胞浓度并协调它们的活性。在这里,我们开发了一种基于细菌群落的血红素和乳酸生物传感器,其中成员通过一个全局共享的群体感应信号耦合,该信号同时控制不同生物传感菌株的活性。该多细胞系统包含一个基因电路,可计算每个生物传感器的活性与共享信号之间的最小值。我们评估了三种群落配置:一种是外部提供共享信号,另一种是通过可诱导基因电路直接产生,第三种是通过非相干前馈环(IFFL)基因电路产生。在这些配置中,IFFL系统能够在较长时间内将共享信号维持在低且稳定的水平,表现出更好的性能和对细胞群体扰动的鲁棒性。最后,我们检查这些耦合群落,以监测人源化粪便样本中的乳酸和血红素用于诊断。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/64be/12015303/f92e3d7172b5/41467_2025_58996_Fig1_HTML.jpg

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