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猪基因家族的全基因组特征鉴定出色素生物合成途径中的潜在调控成分。

Genome-Wide Characterization of Gene Family in Identifies Potential Regulatory Components in Pigment Biosynthesis Pathways.

作者信息

Liu Zhenyu, Peng Yixuan, Qu Yanshu, Huang Bin, Gong Chun, Wen Qiang

机构信息

College of Forestry, Jiangxi Agricultural University, Nanchang 330045, China.

Jiangxi Provincial Key Laboratory of Oil-Tea Camellia Resource Cultivation and Utilization, Jiangxi Academy of Forestry, Nanchang 330032, China.

出版信息

Int J Mol Sci. 2025 May 12;26(10):4622. doi: 10.3390/ijms26104622.

DOI:10.3390/ijms26104622
PMID:40429766
Abstract

The gene family is essential for controlling a variety of plant physiological functions, yet the involvement of specific members in pigment biosynthesis and accumulation in remains unexplored, particularly in anthocyanins and carotenoids, which play crucial roles in the pigmentation of . This study systematically identified 87 genes across 15 chromosomes in through bioinformatic approaches. Further structural and phylogenetic analyses of these TFs enabled their classification into six different subgroups. family expansion was shown to be mostly driven by tandem duplication. W-box elements, which can be binding sites for WRKY transcription factors, were present in a number of biosynthetic genes in the pigment production pathway. Yeast one-hybrid assay confirmed that five WRKY transcription factors (CchWRKY15/24/33/47/76) directly bind to the promoter regions of two key biosynthetic genes, and . Intriguingly, among the five WRKYs tested, the expression levels of CchWRKY15, CchWRKY33, and CchWRKY47 showed the strongest positive associations with flavonoid accumulation ( < 0.05, Pearson correlation analysis).These findings provide novel insights into the evolutionary patterns, transcriptional regulation, and functional characteristics of CchWRKYs, while elucidating their possible regulatory mechanisms in the fruit coloration of .

摘要

该基因家族对于控制多种植物生理功能至关重要,然而特定成员在色素生物合成和积累中的作用仍未得到探索,尤其是在花青素和类胡萝卜素方面,它们在果实色素沉着中起着关键作用。本研究通过生物信息学方法系统地鉴定了15条染色体上的87个CchWRKY基因。对这些转录因子的进一步结构和系统发育分析使其被分为六个不同的亚组。CchWRKY家族的扩张主要由串联重复驱动。W-box元件可作为WRKY转录因子的结合位点,存在于色素产生途径中的许多生物合成基因中。酵母单杂交试验证实,五个WRKY转录因子(CchWRKY15/24/33/47/76)直接结合到两个关键生物合成基因的启动子区域。有趣的是,在所测试的五个WRKY中,CchWRKY15、CchWRKY33和CchWRKY47的表达水平与类黄酮积累呈现出最强的正相关(Pearson相关分析,P<0.05)。这些发现为CchWRKYs的进化模式、转录调控和功能特性提供了新的见解,同时阐明了它们在果实着色中的可能调控机制。

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