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从[具体植物名称]海岸土壤根际分离出的新物种描述以及将[具体物种名称]重新分类为[另一具体物种名称]的晚出异名。

Description of sp. nov., isolated from the coastal soil rhizosphere of and reclassification of as a later heterotypic synonym of .

作者信息

Shu Wei, Rückert-Reed Christian, Gromyko Olexandr, Tistechok Stepan, Kalinowski Jörn, Luzhetskyy Andriy, Wittmann Christoph

机构信息

Institute of Systems Biotechnology, Saarland University, Saarbrücken, Germany.

Bielefeld University, CeBiTec, Technology Platform Genomics, Bielefeld, Germany.

出版信息

Int J Syst Evol Microbiol. 2025 May;75(5). doi: 10.1099/ijsem.0.006711.

Abstract

The strain Je 1-4 was isolated from the coastal rhizosphere soil of M. Bieb. (Crimean Peninsula). Phylogenetic studies based on the 16S rRNA gene sequence revealed that Je 1-4 is phylogenetically close to subsp. NBRC 13452 (JCM 4322) and NBRC 12894 (DSM 40276) with sequence similarities of 99.86 to 99.93%. The genome of strain Je 1-4 consisted of a linear chromosome with a size of 8.9 Mbp and a G+C content of 70.9mol%. Digital DNA-DNA hybridization (dDDH) analysis showed that Je 1-4 is distinct from both subsp. and (dDDH values of 66.6% and 66.7 %, respectively), while the latter two strains likely represent the same species (dDDH value of 92.0%). The predominant fatty acids in the strains were iso-C, anteiso-C and anteiso-C, and the major menaquinones were MK9 H6 and MK9 H8. Based on these genomic and phenotypic data, strain Je 1-4 represents a novel species of , for which the name sp. nov. is proposed. The type strain is Je 1-4 (=DSM 117375=LMG 33490). Additionally, we propose that subsp. Baldacci and Grein 1966 (Approved Lists 1980) is a later heterotypic synonym of (Sveshnikova 1957) Pridham et al. 1958 (Approved Lists 1980).

摘要

菌株Je 1-4是从克里米亚半岛的滨海滨藜根际土壤中分离得到的。基于16S rRNA基因序列的系统发育研究表明,Je 1-4在系统发育上与subsp. NBRC 13452(JCM 4322)和NBRC 12894(DSM 40276)相近,序列相似性为99.86%至99.93%。菌株Je 1-4的基因组由一条大小为8.9 Mbp的线性染色体组成,G+C含量为70.9mol%。数字DNA-DNA杂交(dDDH)分析表明,Je 1-4与subsp.和(dDDH值分别为66.6%和66.7%)均不同,而后两者可能代表同一物种(dDDH值为92.0%)。这些菌株中的主要脂肪酸为异-C、anteiso-C和anteiso-C,主要甲基萘醌为MK9 H6和MK9 H8。基于这些基因组和表型数据,菌株Je 1-4代表了的一个新物种,为此提出名称sp. nov.。模式菌株为Je 1-4(=DSM 117375=LMG 33490)。此外,我们提议将Baldacci和Grein 1966的subsp.(1980年批准名录)作为(Sveshnikova 1957)Pridham等人1958(1980年批准名录)的晚出异名。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b1f6/12163732/6c35f1156f02/ijsem-75-06711-g001.jpg

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