Shu Wei, Rückert-Reed Christian, Gromyko Olexandr, Tistechok Stepan, Kalinowski Jörn, Luzhetskyy Andriy, Wittmann Christoph
Institute of Systems Biotechnology, Saarland University, Saarbrücken, Germany.
Bielefeld University, CeBiTec, Technology Platform Genomics, Bielefeld, Germany.
Int J Syst Evol Microbiol. 2025 May;75(5). doi: 10.1099/ijsem.0.006711.
The strain Je 1-4 was isolated from the coastal rhizosphere soil of M. Bieb. (Crimean Peninsula). Phylogenetic studies based on the 16S rRNA gene sequence revealed that Je 1-4 is phylogenetically close to subsp. NBRC 13452 (JCM 4322) and NBRC 12894 (DSM 40276) with sequence similarities of 99.86 to 99.93%. The genome of strain Je 1-4 consisted of a linear chromosome with a size of 8.9 Mbp and a G+C content of 70.9mol%. Digital DNA-DNA hybridization (dDDH) analysis showed that Je 1-4 is distinct from both subsp. and (dDDH values of 66.6% and 66.7 %, respectively), while the latter two strains likely represent the same species (dDDH value of 92.0%). The predominant fatty acids in the strains were iso-C, anteiso-C and anteiso-C, and the major menaquinones were MK9 H6 and MK9 H8. Based on these genomic and phenotypic data, strain Je 1-4 represents a novel species of , for which the name sp. nov. is proposed. The type strain is Je 1-4 (=DSM 117375=LMG 33490). Additionally, we propose that subsp. Baldacci and Grein 1966 (Approved Lists 1980) is a later heterotypic synonym of (Sveshnikova 1957) Pridham et al. 1958 (Approved Lists 1980).
菌株Je 1-4是从克里米亚半岛的滨海滨藜根际土壤中分离得到的。基于16S rRNA基因序列的系统发育研究表明,Je 1-4在系统发育上与subsp. NBRC 13452(JCM 4322)和NBRC 12894(DSM 40276)相近,序列相似性为99.86%至99.93%。菌株Je 1-4的基因组由一条大小为8.9 Mbp的线性染色体组成,G+C含量为70.9mol%。数字DNA-DNA杂交(dDDH)分析表明,Je 1-4与subsp.和(dDDH值分别为66.6%和66.7%)均不同,而后两者可能代表同一物种(dDDH值为92.0%)。这些菌株中的主要脂肪酸为异-C、anteiso-C和anteiso-C,主要甲基萘醌为MK9 H6和MK9 H8。基于这些基因组和表型数据,菌株Je 1-4代表了的一个新物种,为此提出名称sp. nov.。模式菌株为Je 1-4(=DSM 117375=LMG 33490)。此外,我们提议将Baldacci和Grein 1966的subsp.(1980年批准名录)作为(Sveshnikova 1957)Pridham等人1958(1980年批准名录)的晚出异名。