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海洋深处海绵中分离得到的放线菌，命名为海洋巴斯德氏菌（Streptomyces bathyalis sp. nov.）。

Streptomyces bathyalis sp. nov., an actinobacterium isolated from the sponge in a deep sea.

机构信息

Microbial Strain Collection (MISG), Helmholtz Centre for Infection Research (HZI), 38124, Braunschweig, Germany.

Research Unit for Clean Technology, Indonesian Institute of Sciences (LIPI), 40135, Bandung, Indonesia.

出版信息

Antonie Van Leeuwenhoek. 2021 Apr;114(4):425-435. doi: 10.1007/s10482-021-01528-4. Epub 2021 Feb 17.

DOI:10.1007/s10482-021-01528-4
PMID:33595745
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7979654/
Abstract

A novel actinobacterium, designated ASO4wet, was isolated from the unidentified sponge (SO4) in the deep sea collected of the North Atlantic Ocean. Study of 16S rRNA gene sequences indicated that strain ASO4wet is a member of the genus Streptomyces and showed the closest similarities to Streptomyces karpasiensis K413 (98.87 %), Streptomyces glycovorans YIM M 10366 (98.38 %), and Streptomyces abyssalis YIM M 10400 (97.53 %). Strain ASO4wet contained MK-9(H8) as the predominant menaquinone and the major fatty acids are iso-C, anteiso-C, and iso-C. Polyphasic taxonomy was carried out between strain ASO4wet and its phylogenetically closely related Streptomyces strains, which further elucidated their relatedness and revealed that strain ASO4wet could be distinguished from currently known Streptomyces species. Strain ASO4wet clearly represents a novel species in genus Streptomyces. We propose the name Streptomyces bathyalis sp. nov., with the type strain ASO4wet (= DSM 106605 = NCCB 100657). Analysis of the whole-genome sequence of S. bathyalis revealed that genome size is 7,377,472 bp with 6332 coding sequences.

摘要

一株新型放线菌，ASO4wet 菌株，从北太平洋深海采集的未鉴定海绵（SO4）中分离得到。16S rRNA 基因序列研究表明，ASO4wet 菌株属于链霉菌属，与链霉菌属的卡拉巴斯蒂亚链霉菌 K413（98.87%）、糖多孢链霉菌 YIM M 10366（98.38%）和深渊链霉菌 YIM M 10400（97.53%）最为相似。ASO4wet 菌株含有 MK-9(H8) 作为主要的menaquinone，主要脂肪酸为 iso-C、anteiso-C 和 iso-C。ASO4wet 菌株与亲缘关系密切的链霉菌属菌株进行了多相分类学研究，进一步阐明了它们的亲缘关系，并表明 ASO4wet 菌株可与目前已知的链霉菌种区分开来。ASO4wet 菌株清楚地代表了链霉菌属中的一个新种。我们提出了 Streptomyces bathyalis sp. nov. 的名称，其模式菌株为 ASO4wet（=DSM 106605=NCCB 100657）。对 S. bathyalis 的全基因组序列分析表明，其基因组大小为 7,377,472bp，包含 6332 个编码序列。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9933/7979654/adab89f77ba5/10482_2021_1528_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9933/7979654/727570cb1927/10482_2021_1528_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9933/7979654/7def0dd8d10f/10482_2021_1528_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9933/7979654/f48c9d3e5299/10482_2021_1528_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9933/7979654/b392bde7fa7f/10482_2021_1528_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9933/7979654/9a856a17a6d8/10482_2021_1528_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9933/7979654/adab89f77ba5/10482_2021_1528_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9933/7979654/727570cb1927/10482_2021_1528_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9933/7979654/7def0dd8d10f/10482_2021_1528_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9933/7979654/f48c9d3e5299/10482_2021_1528_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9933/7979654/b392bde7fa7f/10482_2021_1528_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9933/7979654/9a856a17a6d8/10482_2021_1528_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9933/7979654/adab89f77ba5/10482_2021_1528_Fig6_HTML.jpg

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