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新种,从水稻根际土壤中分离得到,正式提议将其重新分类为的晚出异名。

sp. nov., isolated from paddy rhizosphere soil and formal proposal to reclassify as a later heterotypic synonym of .

作者信息

Butdee Waranya, Muangham Supattra, Chonudomkul Duenrut, Duangmal Kannika

机构信息

Department of Microbiology, Faculty of Science, Kasetsart University, Chatuchak, Bangkok 10900, Thailand.

Biodiversity Center Kasetsart University (BDCKU), Bangkok 10900, Thailand.

出版信息

Int J Syst Evol Microbiol. 2023 Feb;73(1). doi: 10.1099/ijsem.0.005639.

Abstract

The taxonomic position of a novel actinomycete, designated strain RS10V-4, was determined using a polyphasic approach. Strain RS10V-4 was isolated from paddy rhizosphere soil of rice plant ( L.). The morphological, physiological and chemotaxonomic properties were consistent with its classification in the genus . On the basis of 16S rRNA gene sequence analysis, strain RS10V-4 belongs to the genus and had the highest sequence similarity to NBRC 15452 (98.3 %). The G+C content of the genomic DNA was 73.8 %. Digital DNA-DNA hybridization and average nucleotide identity values between the genome sequences of strain RS10V-4 and ATCC 11455 were lower than the recommendation threshold values for the recognition of species within the same genus. The whole-cell hydrolysates of strain RS10V-4 contained diaminopimelic acid as the diagnostic diamino acid and the whole-cell sugars were glucose and ribose. The predominant menaquinones were MK-9(H) and MK-9(H). The predominant cellular fatty acids (>10 %) were iso-C, anteiso-C, iso-C and iso-C. The polar lipids of strain RS10V-4 contained diphosphatidylglycerol, hydroxyphosphatidylethanolamine, phosphatidylethanolamine, phosphatidylinositol, an unidentified aminolipid, two unidentified lipids and an unidentified phospholipid. On the basis of these phenotypic and genotypic characteristics, it is supported that strain RS10V-4 represents a novel species of the genus , for which the name sp. nov. is proposed. The type strain is RS10V-4 (=TBRC 15167=NBRC 115345). In addition, the comparison of the whole genome sequences and phenotypic features suggested that and belong to the same species. Therefore, it is proposed that is reclassified as a later heterotypic synonym of .

摘要

采用多相分类法确定了一株新的放线菌(命名为RS10V-4菌株)的分类地位。RS10V-4菌株从水稻(L.)的稻田根际土壤中分离得到。其形态、生理和化学分类学特性与其在该属中的分类一致。基于16S rRNA基因序列分析,RS10V-4菌株属于该属,与NBRC 15452的序列相似性最高(98.3%)。基因组DNA的G+C含量为73.8%。RS10V-4菌株与ATCC 11455的基因组序列之间的数字DNA-DNA杂交和平均核苷酸同一性值低于同一属内物种识别的推荐阈值。RS10V-4菌株的全细胞水解产物含有二氨基庚二酸作为诊断性二氨基酸,全细胞糖类为葡萄糖和核糖。主要的甲基萘醌是MK-9(H)和MK-9(H)。主要的细胞脂肪酸(>10%)是异-C、anteiso-C、异-C和异-C。RS10V-4菌株的极性脂质包含双磷脂酰甘油、羟基磷脂酰乙醇胺、磷脂酰乙醇胺、磷脂酰肌醇、一种未鉴定的氨基脂质、两种未鉴定的脂质和一种未鉴定的磷脂。基于这些表型和基因型特征,支持RS10V-4菌株代表该属的一个新物种,为此提出新物种名为sp. nov.。模式菌株为RS10V-4(=TBRC 15167=NBRC 115345)。此外,全基因组序列和表型特征的比较表明和属于同一物种。因此,建议将重新分类为的晚出异名。

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