Akram Javeria, Budagavi Tavishi, Zhang Zhiyao, Fowler Morgan, Gaunt Andrew J, Barkman Todd J, Stull Frederick
Department of Chemistry, Western Michigan University, Kalamazoo, Michigan 49008, United States.
Department of Biological Sciences, Western Michigan University, Kalamazoo, Michigan 49008, United States.
Biochemistry. 2025 Jul 1;64(13):2834-2847. doi: 10.1021/acs.biochem.5c00129. Epub 2025 Jun 12.
Enzymes of the ubiquitous flavoprotein amine oxidoreductase (FAO) superfamily catalyze C-N bond oxidation of amine-containing substrates using flavin adenine dinucleotide (FAD) as a prosthetic group. Their reaction proceeds via a two-step mechanism involving hydride transfer from the substrate to the bound FAD cofactor, and the reduced flavin is subsequently reoxidized by a physiological electron acceptor. For nearly a century, it has been generally accepted that all enzymes in the FAO superfamily are oxidases, i.e., donating the electrons from substrate oxidation to dioxygen (O). However, we recently showed that the FAO family enzymes nicotine oxidoreductase and pseudooxynicotine amine oxidase are not oxidases because they do not utilize oxygen efficiently, and instead are cytochrome utilizing dehydrogenases. Here we characterized other bacterial FAOs and show that many are actually dehydrogenases that react poorly with O in favor of using a cytochrome (CytC) protein closely encoded in the genome, indicating that there are many exceptions to the "oxidase" paradigm that has been traditionally ascribed to the FAO superfamily. These dehydrogenases are highly specific for the CytC from the same organism and are phylogenetically clustered with other FAOs that appear to be oxidases. Our findings further undermine the long-held view that all FAO family enzymes are oxidases and suggest that evolutionary switches between different oxidants are surprisingly frequent in this enzyme family.
普遍存在的黄素蛋白胺氧化还原酶(FAO)超家族的酶以黄素腺嘌呤二核苷酸(FAD)作为辅基催化含胺底物的C-N键氧化。它们的反应通过两步机制进行,包括从底物向结合的FAD辅因子转移氢化物,随后还原的黄素被生理电子受体再氧化。近一个世纪以来,人们普遍认为FAO超家族中的所有酶都是氧化酶,即从底物氧化中获取电子并将其提供给氧气(O₂)。然而,我们最近发现FAO家族的酶尼古丁氧化还原酶和假氧化尼古丁胺氧化酶并非氧化酶,因为它们不能有效地利用氧气,相反,它们是利用细胞色素c的脱氢酶。在这里,我们对其他细菌FAO进行了表征,结果表明许多实际上是脱氢酶,它们与O₂反应不佳,而是倾向于利用基因组中紧密编码的细胞色素c(CytC)蛋白,这表明传统上归因于FAO超家族的“氧化酶”范式存在许多例外情况。这些脱氢酶对来自同一生物体的CytC具有高度特异性,并且在系统发育上与其他看似是氧化酶的FAO聚集在一起。我们的研究结果进一步削弱了长期以来的观点,即所有FAO家族酶都是氧化酶,并表明在这个酶家族中,不同氧化剂之间的进化转换出人意料地频繁。