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Deep Learning to Predict the Biosynthetic Gene Clusters in Bacterial Genomes.深度学习预测细菌基因组中的生物合成基因簇。
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4
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database.GTDB-Tk：一个使用基因组分类数据库对基因组进行分类的工具包。
Bioinformatics. 2019 Nov 15;36(6):1925-7. doi: 10.1093/bioinformatics/btz848.
5
Isolation, Molecular Characterization and Probiotic Potential of Lactic Acid Bacteria in Saudi Raw and Fermented Milk.沙特生牛奶和发酵乳中乳酸菌的分离、分子特征及益生菌潜力
Evid Based Complement Alternat Med. 2018 Jul 25;2018:7970463. doi: 10.1155/2018/7970463. eCollection 2018.
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来自菲律宾发酵鱼的BIL20和BIL24的基因组序列草图具有带有多种潜在生物活性的生物合成基因簇。

Draft genome sequences of BIL20 and BIL24, from Philippine fermented fish, feature biosynthetic gene clusters with diverse potential bioactivities.

作者信息

Veluz Joshua T, Gloria Paul Christian T, Siringan Maria Auxilia T, Dogma Irineo J

机构信息

Natural Sciences Research Institute, University of the Philippines-Diliman, Quezon City, Metro Manila, Philippines.

The Graduate School, University of Santo Tomas, Manila city, Metro Manila, Philippines.

出版信息

Microbiol Resour Announc. 2025 Jul 10;14(7):e0007525. doi: 10.1128/mra.00075-25. Epub 2025 Jun 18.

DOI:10.1128/mra.00075-25
PMID:40530864
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC12243497/
Abstract

This announcement presents the high-quality draft genomes of BIL20 and BIL24, isolated from Philippine fermented fish, with probiotic potential. The genomes feature biosynthetic gene clusters linked to antibacterial, antifungal, and cytotoxic activities. This announcement contributes to the limited genomic data on lactic acid bacteria from Philippine fermented foods.

摘要

本公告展示了从菲律宾发酵鱼中分离出的具有益生菌潜力的BIL20和BIL24的高质量基因组草图。这些基因组具有与抗菌、抗真菌和细胞毒性活性相关的生物合成基因簇。本公告为来自菲律宾发酵食品的乳酸菌的有限基因组数据做出了贡献。