Zhao Guang, Chen Lina, Zhang Lin, Liao Chancan, Wang Jin
Key Laboratory of Cultivation and Protection for Non-Wood Forest Trees, Ministry of Education, Central South University of Forestry and Technology, Changsha, China.
Hunan Forestry Seedling Breeding Demonstration Center, The Forestry Department of Hunan Province, Changsha, China.
Front Plant Sci. 2025 Jun 9;16:1599849. doi: 10.3389/fpls.2025.1599849. eCollection 2025.
, a crucial woody oil crop in China, produces seeds with over 90% unsaturated fatty acids offering substantial nutritional value and exists predominantly as cultivated tetraploid varieties (2n=4x=60) due to its polyploid nature. The DNA-binding with one finger (Dof) transcription factor play multiple roles in plant growth, development, and abiotic stress response pathways. However, the regulatory mechanisms of genes underlying fatty acids/lipids biosynthesis during seed morphogenesis in remain poorly characterized.
In this study, genome-wide identified a total of 40 members of the family with 116 alleles in tetraploid (COL-tetra).
All members possess varying numbers of highly conserved C-C-type zinc finger domains. Phylogenetic analysis clustered genes into nine categories, and significant divergence was observed in the expression levels of all family members across different growth and development stages of COL-tetra seeds. After physiological data determination at various levels, differential expression analysis and correlation analysis of fatty acid/lipid synthesis genes revealed that is a typical candidate nuclear-localized transcription factor which significantly highly expressed in the middle period of seed development.
Our findings not only comprehensively characterize the genomic organization of family but also propose a functional candidate for lipid biosynthesis regulation, thereby advancing molecular breeding strategies and elite cultivar selection in COL-tetra.
作为中国一种重要的木本油料作物,其种子含有超过90%的不饱和脂肪酸,具有很高的营养价值,并且由于其多倍体性质,主要以栽培四倍体品种(2n = 4x = 60)存在。单指DNA结合(Dof)转录因子在植物生长、发育和非生物胁迫响应途径中发挥多种作用。然而,在种子形态发生过程中,其脂肪酸/脂质生物合成相关基因的调控机制仍不清楚。
在本研究中,通过全基因组鉴定,在四倍体COL-tetra中总共鉴定出40个该家族成员,共116个等位基因。
所有成员都具有不同数量的高度保守的C-C型锌指结构域。系统发育分析将该家族基因分为九类,并且在COL-tetra种子不同生长发育阶段,所有家族成员的表达水平存在显著差异。在进行各级生理数据测定后,对脂肪酸/脂质合成基因进行差异表达分析和相关性分析,结果表明该基因是一个典型的候选核定位转录因子,在种子发育中期显著高表达。
我们的研究结果不仅全面地描述了该家族的基因组结构,还提出了一个脂质生物合成调控的功能候选基因,从而推进了COL-tetra的分子育种策略和优良品种选择。