Pandey Shivangi, Choudhari Jyoti Kant, Tripathi Abhishek, Singh Akanksha, Antony Anna, Chouhan Usha
Rajiv Gandhi Proudyogiki Vishwavidyalaya, Bhopal, India.
Sanjeev Agrawal Global Educational (SAGE) University, Bhopal, India.
Methods Mol Biol. 2025;2952:273-282. doi: 10.1007/978-1-0716-4690-8_16.
Artificial intelligence (AI) plays a critical role in predicting and improving genome editing methods, including CRISPR/Cas9. Recently, several AI models, such as DeepCRISPR, CRISTA, and Deep High Fidelity (DeepHF), have been utilized to design guide RNAs (gRNAs) for CRISPR-Cas systems. These models assess genomic context, desired mutation type, on-target and off-target scores, and potential off-target locations. AI models help improve various genome editing methods, such as base, prime, and epigenome editing, which allow for precise and intentional changes to DNA sequences without the need for donor DNA templates. Furthermore, integrating AI with genome editing and precision medicine enables the creation of personalized treatments tailored to each individual's unique genetic profile. Examining genomic data enables the identification of mutations, variations, and biomarkers linked to diseases like cancer, diabetes, and Alzheimer's disease. Integrating AI with genome editing can potentially enhance genetic modification techniques' precision, efficiency, and cost-effectiveness. Furthermore, it presents novel prospects for fields like genetics, biomedicine, and healthcare, which could significantly impact human health. However, several challenges still exist, including high costs, inaccurate edits, and effective delivery methods for CRISPR components, improved editing performance, and safety in clinical applications.
人工智能(AI)在预测和改进包括CRISPR/Cas9在内的基因组编辑方法中发挥着关键作用。最近,几种人工智能模型,如DeepCRISPR、CRISTA和深度高保真(DeepHF),已被用于为CRISPR-Cas系统设计引导RNA(gRNA)。这些模型评估基因组背景、所需的突变类型、靶向和脱靶评分以及潜在的脱靶位置。人工智能模型有助于改进各种基因组编辑方法,如碱基编辑、引导编辑和表观基因组编辑,这些方法允许在不需要供体DNA模板的情况下对DNA序列进行精确和有意的改变。此外,将人工智能与基因组编辑和精准医学相结合,能够创建针对每个人独特基因特征的个性化治疗方案。检查基因组数据能够识别与癌症、糖尿病和阿尔茨海默病等疾病相关的突变、变异和生物标志物。将人工智能与基因组编辑相结合可能会提高基因编辑技术的精准性、效率和成本效益。此外,它为遗传学、生物医学和医疗保健等领域带来了新的前景,可能会对人类健康产生重大影响。然而,仍然存在一些挑战,包括高成本、编辑不准确以及CRISPR组件的有效递送方法、提高编辑性能和临床应用中的安全性。