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人工智能在合成生物学中的进展综述。

Review on Advancement of AI in Synthetic Biology.

作者信息

Mirchandani Ishita, Khandhediya Yaminee, Chauhan Kshipra

机构信息

School of Applied Science and Technology, Academic Block 1, Gujarat Technological University, Chandkheda, Ahmedabad, Gujarat, India.

出版信息

Methods Mol Biol. 2025;2952:483-490. doi: 10.1007/978-1-0716-4690-8_26.

Abstract

The way biological systems are built and designed has been revolutionized by synthetic biology. Further enhancements like predictive modeling, optimization and systematic design of complex biological systems, is now possible due to integration of Artificial Intelligence into synthetic biology. This review shares insights on the role of AI in advancement of synthetic biology, including genome editing, metabolic pathway optimization and biological circuit design etc. AI-driven tools contribute to the increased efficiency and precision. Application of deep learning and machine learning has made it possible to make CRISPR-cas9, de novo protein design and gene circuit development more precise. However, there are still some persistent challenges, especially in curating high-quality biological datasets and bridging interdisciplinary gaps between computational and experimental scientists. Future perspectives focus on causal reasoning in AI models, integration of physics based algorithms, and promoting collaboration across disciplines to achieve breakthroughs in both synthetic biology and AI. By joining these fields, the transformative power of synthetic biology and AI can be unlocked and applied in the fields of medicine, biotechnology and environmental sustainability, pioneering a way for a new era of bioengineering.

摘要

合成生物学彻底改变了生物系统的构建和设计方式。由于将人工智能集成到合成生物学中,现在对复杂生物系统进行预测建模、优化和系统设计等进一步增强成为可能。本综述分享了关于人工智能在合成生物学发展中的作用的见解,包括基因组编辑、代谢途径优化和生物电路设计等。人工智能驱动的工具提高了效率和精度。深度学习和机器学习的应用使CRISPR-cas9、从头蛋白质设计和基因电路开发更加精确。然而,仍然存在一些持续的挑战,特别是在整理高质量生物数据集以及弥合计算科学家和实验科学家之间的跨学科差距方面。未来的展望集中在人工智能模型中的因果推理、基于物理的算法的整合,以及促进跨学科合作以在合成生物学和人工智能领域取得突破。通过结合这些领域,可以释放合成生物学和人工智能的变革力量,并将其应用于医学、生物技术和环境可持续性领域,开创生物工程新时代的道路。

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