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[具体品种]叶绿体基因组和线粒体基因组的综合组装与比较分析

Comprehensive Assembly and Comparative Analysis of Chloroplast Genome and Mitogenome of var. .

作者信息

Liao Ruyu, Zhao Mengshi, Lan Qin, Peng Song, Lin Fengqiang, Li Zhaolong

机构信息

Fruit Research Institute, Fujian Academy of Agriculture Science, Fuzhou 350013, China.

Institute of Animal Husbandry and Veterinary Medicine, Fujian Academy of Agricultural Sciences, Fuzhou 350013, China.

出版信息

Genes (Basel). 2025 May 29;16(6):660. doi: 10.3390/genes16060660.

DOI:10.3390/genes16060660
PMID:40565552
Abstract

plants are widely distributed across Asia and Europe, yet their intricate phylogenetic relationships pose significant challenges for systematic studies and interspecies identification. : To clarify the mitochondrial and chloroplast genomes of var. , and to reveal its evolutionary relationship and historical gene flow with domesticated cherries. : In this study, we assembled, annotated, and analyzed the first mitochondrial and chloroplast genomes of var. , a species within the genus. : The mitochondrial genome was found to be 484,858 base pairs in length, exhibiting a typical circular conformation. Phylogenetic analysis revealed a close evolutionary relationship between and , suggesting historical gene flow between these two species last genomes; mitochondrial genomes; phylogeny analysis. : To provide a genomic basis for resolving the phylogenetic controversies within the Li-associated plants, elucidating their evolutionary mechanisms, and formulating breeding strategies.

摘要

植物广泛分布于亚洲和欧洲,然而它们复杂的系统发育关系给系统研究和种间鉴定带来了重大挑战。:为了阐明[品种名]变种的线粒体和叶绿体基因组,并揭示其与驯化樱桃的进化关系和历史基因流。:在本研究中,我们组装、注释并分析了[品种名]变种([属名]属内的一个物种)的首个线粒体和叶绿体基因组。:发现线粒体基因组长度为484,858个碱基对,呈现典型的环状构象。系统发育分析揭示了[品种名]变种与[另一品种名]之间存在密切的进化关系,表明这两个物种之间存在历史基因流;线粒体基因组;系统发育分析。:为解决李属相关植物的系统发育争议、阐明其进化机制和制定育种策略提供基因组基础。

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本文引用的文献

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assembly and comparative analysis of cherry ( subgenus ) mitogenomes.樱桃(亚属)线粒体基因组的组装与比较分析
Front Plant Sci. 2025 Mar 24;16:1568698. doi: 10.3389/fpls.2025.1568698. eCollection 2025.
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Analysis of similarities and differences of accessions belonging to Prunus domestica L. and P. insititia L. using endocarp dimensions and shape variations.利用内果皮尺寸和形状变异分析欧洲李(Prunus domestica L.)和樱桃李(P. insititia L.)种质资源的异同。
Vavilovskii Zhurnal Genet Selektsii. 2025 Feb;29(1):44-54. doi: 10.18699/vjgb-25-06.
3
Physiological characteristics and transcriptomic analyses of alfalfa root crown in wintering.
紫花苜蓿越冬期根颈的生理特性及转录组分析
Front Plant Sci. 2024 Dec 9;15:1486564. doi: 10.3389/fpls.2024.1486564. eCollection 2024.
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Mitochondrial membrane lipids in the regulation of bioenergetic flux.线粒体膜脂在生物能量流调节中的作用。
Cell Metab. 2024 Sep 3;36(9):1963-1978. doi: 10.1016/j.cmet.2024.07.024. Epub 2024 Aug 22.
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Plant mitochondrial genome map (PMGmap): A software tool for the comprehensive visualization of coding, noncoding and genome features of plant mitochondrial genomes.植物线粒体基因组图谱 (PMGmap):一种软件工具,用于全面可视化植物线粒体基因组的编码、非编码和基因组特征。
Mol Ecol Resour. 2024 Jul;24(5):e13952. doi: 10.1111/1755-0998.13952. Epub 2024 Mar 24.
6
Assembly and analysis of the complete mitochondrial genome of the Chinese wild dwarf almond ().中国野生矮扁桃线粒体全基因组的组装与分析。
Front Genet. 2024 Jan 11;14:1329060. doi: 10.3389/fgene.2023.1329060. eCollection 2023.
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Antioxidative, Metabolic and Vascular Medicinal Potentials of Natural Products in the Non-Edible Wastes of Fruits Belonging to the and Genera: A Review.属于蔷薇科和桑科的水果非食用废弃物中天然产物的抗氧化、代谢及血管药用潜力:综述
Plants (Basel). 2024 Jan 10;13(2):191. doi: 10.3390/plants13020191.
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Front Plant Sci. 2023 Dec 8;14:1266797. doi: 10.3389/fpls.2023.1266797. eCollection 2023.
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Plant Cell. 2024 Mar 29;36(4):1159-1181. doi: 10.1093/plcell/koad320.
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