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从人类粪便中分离出的新种芹菜拟杆菌(Bacteroides celer sp. nov.)和粘蛋白食拟杆菌(Bacteroides mucinivorans sp. nov.),以及将韩国拟杆菌(Bacteroides koreensis Shin et al. 2017)和克里布拟杆菌(Bacteroides kribbi Shin et al. 2017)重新分类为卵形拟杆菌(Bacteroides ovatus Eggerth and Gagnon 1933,1980年批准名录)的晚出异名。

Bacteroides celer sp. nov. and Bacteroides mucinivorans sp. nov., isolated from human feces, and the reclassification of Bacteroides koreensis Shin et al. 2017 and Bacteroides kribbi Shin et al. 2017 as later heterotypic synonyms of Bacteroides ovatus Eggerth and Gagnon 1933 (Approved Lists 1980).

作者信息

Yang Ah-In, Kim Bora, Kang Woorim, Joe Hae-In, Shin Na-Ri

机构信息

Biological Resource Center, Korea Research Institute of Bioscience and Biotechnology, Jeongeup 56212, Republic of Korea.

Department of Biology, Kyung Hee University, Seoul 02447, Republic of Korea.

出版信息

J Microbiol. 2025 Jun;63(6):e2502006. doi: 10.71150/jm.2502006. Epub 2025 Jun 30.

Abstract

Two novel, Gram-stain-negative, anaerobic, and non-motile bacterial strains, designated KFT8T and CG01T, were isolated from the feces of healthy individuals without diagnosed diseases and characterized using a polyphasic approach. Phylogenetic analysis revealed that both strains belong to the genus Bacteroides, with < 99.0% similarity in their 16S rRNA gene sequences to B. facilis NSJ-77T and B. nordii JCM 12987T. Within the genus Bacteroides, strain KFT8T exhibited the highest Orthologous Average Nucleotide Identity value of 94.7% and a digital DNA-DNA hybridization value of 63.7% with B. ovatus ATCC 8483T, whereas strain CG01T showed the highest values of 95.3% and 63.3%, respectively, with B. nordii JCM 12987T. The values between the two novel strains were 74.8% and 21.4%, respectively, which are below the species delineation thresholds, supporting their classification as novel species. The major fatty acid of strain KFT8T was C18:1 ω9c, whereas strain CG01T predominantly contained summed feature 11 (comprising iso-C17:0 3OH and/or C18:2 DMA). The only respiratory quinone was MK-11, the major polar lipid was phosphatidylethanolamine. Both strains produced succinic acid and acetic acid as common metabolic end-products of fermentation, while lactic acid and formic acid were detected individually in each strain. Based on polyphasic characterization, strains KFT8T (= KCTC 15614T = JCM 36011T) and CG01T (= KCTC 15613T = JCM 36010T) represent two novel species within the genus Bacteroides, for which the names Bacteroides celer sp. nov. and Bacteroides mucinivorans sp. nov. are proposed, respectively. Additionally, genome-based analyses and phenotypic comparisons revealed that B. koreensis and B. kribbi represent the same strain, showing genomic relatedness to B. ovatus that exceeds the threshold for species delineation. Consequently, we propose the reclassification of B. koreensis Shin et al. 2017 and B. kribbi Shin et al. 2017 as later heterotypic synonyms of B. ovatus Eggerth and Gagnon 1933 (Approved Lists 1980).

摘要

从无确诊疾病的健康个体粪便中分离出两株新型革兰氏阴性、厌氧且不运动的细菌菌株,分别命名为KFT8T和CG01T,并采用多相分类法对其进行了表征。系统发育分析表明,这两株菌株均属于拟杆菌属,其16S rRNA基因序列与脆弱拟杆菌NSJ - 77T和诺氏拟杆菌JCM 12987T的相似度均小于99.0%。在拟杆菌属内,菌株KFT8T与卵形拟杆菌ATCC 8483T的直系同源平均核苷酸同一性值最高为94.7%,数字DNA - DNA杂交值为63.7%;而菌株CG01T与诺氏拟杆菌JCM 12987T的相应最高值分别为95.3%和63.3%。这两株新菌株之间的相应值分别为74.8%和21.4%,均低于物种划分阈值,支持将它们分类为新物种。菌株KFT8T的主要脂肪酸为C18:1 ω9c,而菌株CG01T主要含有总和特征11(包括异-C17:0 3OH和/或C18:2 DMA)。唯一的呼吸醌为MK - 11,主要极性脂为磷脂酰乙醇胺。两株菌株均产生琥珀酸和乙酸作为发酵的常见代谢终产物,而乳酸和甲酸在各菌株中单独检测到。基于多相表征,菌株KFT8T(= KCTC 15614T = JCM 36011T)和CG01T(= KCTC 15613T = JCM 36010T)代表拟杆菌属内的两个新物种,分别命名为敏捷拟杆菌(Bacteroides celer sp. nov.)和黏蛋白分解拟杆菌(Bacteroides mucinivorans sp. nov.)。此外,基于基因组的分析和表型比较表明,韩国拟杆菌和克里布拟杆菌代表同一菌株,其与卵形拟杆菌的基因组相关性超过了物种划分阈值。因此,我们提议将2017年Shin等人描述的韩国拟杆菌和克里布拟杆菌重新分类为1933年Eggerth和Gagnon描述的卵形拟杆菌(1980年批准名录)的晚出异名。

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