Faber Anna, Politan Roland J, Stukenberg Daniel, Morris Kathryn M, Kim Rebecca, Jeon Ethan, Inckemann René, Becker Anke, Thuronyi B, Fritz Georg
School of Molecular Sciences, The University of Western Australia, Crawley 6009, Australia.
Forrest Research Foundation, Crawley 6009, Australia.
Nucleic Acids Res. 2025 Jul 8;53(13). doi: 10.1093/nar/gkaf580.
Vibrio natriegens, with its exceptionally fast growth rate, has great promise as a revolutionary chassis for synthetic biology, yet the realization of its full potential has been limited by the lack of robust, standardized genetic tools. Here, we present the Vnat Collection, a comprehensive, modular toolkit specifically engineered to overcome these limitations. Leveraging optimized Golden Gate cloning strategies, we introduce improved junction sequences and a highly efficient dropout part system, achieving up to a 300-fold increase in assembly efficiency. Our toolkit significantly expands the synthetic biology toolbox by providing a wide array of characterized inducible promoters, enabling precise, orthogonal gene regulation, and novel operon connectors to streamline the construction of multi-gene pathways critical for metabolic engineering. Furthermore, we enhance genome editing workflows through refined NT-CRISPR methods, incorporating homology-flanked targeting constructs and demonstrating a simplified protocol that eliminates intermediate purification steps. With over 220 rigorously validated modular components, the Vnat Collection establishes an advanced standard for genetic engineering of V. natriegens, empowering researchers to efficiently harness this organism's unparalleled potential for diverse biotechnology applications.
费氏弧菌生长速度极快,作为合成生物学的革命性底盘具有巨大潜力,但由于缺乏强大、标准化的遗传工具,其全部潜力的实现受到了限制。在此,我们展示了Vnat文库,这是一个经过专门设计以克服这些限制的全面、模块化工具包。利用优化的金门克隆策略,我们引入了改进的连接序列和高效的缺失部分系统,使组装效率提高了300倍。我们的工具包通过提供大量经过表征的诱导型启动子,显著扩展了合成生物学工具箱,实现精确、正交的基因调控,并通过新型操纵子连接器简化了对代谢工程至关重要的多基因途径的构建。此外,我们通过改进的NT-CRISPR方法优化了基因组编辑工作流程,纳入了同源侧翼靶向构建体,并展示了一种简化方案,消除了中间纯化步骤。Vnat文库拥有220多个经过严格验证的模块化组件,为费氏弧菌的基因工程建立了先进标准,使研究人员能够有效利用这种生物体在各种生物技术应用中无与伦比的潜力。