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基于靶向测序(GBTS)的基因分型遗传图谱揭示了小麦品种法兰德斯中抗条锈病的协同相互作用。

Genotyping by target sequencing (GBTS)-based genetic mapping uncovers synergistic interactions for stripe rust resistance in wheat cultivar Flanders.

作者信息

Liu Lei, Han Jinyu, Zhang Dandan, Li Yuqing, Zhang Chuanliang, Liu Shengjie, Yan Ziyi, Zheng Weijun, Li Chunlian, Zeng Qingdong, Kang Zhensheng, Han Dejun, Zhang Wentao, Yao Qiang, Wu Jianhui

机构信息

State Key Laboratory of Crop Stress Resistance and High-Efficiency Production, College of Agronomy, Northwest A&F University, Yangling, Shaanxi, 712100, People's Republic of China.

Key Laboratory of Agricultural Integrated Pest Management, Academy of Agriculture and Forestry Science, Qinghai University, Xining, Qinghai, 810016, People's Republic of China.

出版信息

Theor Appl Genet. 2025 Jul 21;138(8):187. doi: 10.1007/s00122-025-04969-x.

DOI:10.1007/s00122-025-04969-x
PMID:40689963
Abstract

YrFLA.1, YrFLA.2 and YrFLA.3, identified in wheat cultivar Flanders, collaboratively boost the level of adult plant resistance to stripe rust. Bread wheat cultivar Flanders has maintained an adequate level of adult plant resistance (APR) to stripe rust in China for more than 30 years despite exposure to a changing and variable pathogen population. To identify genomic segments conferring stripe rust resistance, an F recombinant inbred line (RILs) population from a cross of Avocet S and Flanders was analyzed genetically. The population and parents were evaluated in multiple environments and genotyped using the GenoBaitsWheatSNP16K array. Three stable QTL detected on chromosome arms 1BL, 3BL and 7BL were designated QYrfla.nwafu-1BL.7 (YrFLA.1, in a hot-spot region), QYrfla.nwafu-3BL.2 (YrFLA.2, possibly novel) and QYrfla.nwafu-7BL.6 (YrFLA.3, in a hot-spot region), respectively. YrFLA.3 was more effective than YrFLA.1 and YrFLA.2 in all environments, but synergistic interaction between all three loci led to significant enhancement of resistance. Under rust-free conditions there was almost no difference in thousand grain weight, but results from the rust nursery indicated a 21.81-28.76% reduction in the RILs lacking the QTL compared to the RILs with one or more QTL. On the other side, a panel of 679 current Chinese cultivars and breeding lines based on the GenoBaits assay was used to characterize the haplotype variation and the distribution of these loci. The haplotypes with the YrFLA.1, YrFLA.2 and YrFLA.3 regions have frequencies of 65.83, 18.99 and 43.44%, respectively, reducing disease severities of 17.57-37.54%. These findings indicate that effective gene pyramiding strategy is crucial for developing high yielding and durable resistance cultivars.

摘要

在小麦品种佛兰德斯中鉴定出的YrFLA.1、YrFLA.2和YrFLA.3共同提高了成株对条锈病的抗性水平。面包小麦品种佛兰德斯在中国30多年来一直保持着对条锈病的足够水平的成株抗性(APR),尽管面临不断变化和多样的病原菌群体。为了鉴定赋予条锈病抗性的基因组片段,对Avocet S和佛兰德斯杂交产生的F重组自交系(RILs)群体进行了遗传分析。在多个环境中对该群体及其亲本进行了评估,并使用GenoBaitsWheatSNP16K芯片进行基因分型。在染色体臂1BL、3BL和7BL上检测到的三个稳定QTL分别被命名为QYrfla.nwafu-1BL.7(YrFLA.1,位于一个热点区域)、QYrfla.nwafu-3BL.2(YrFLA.2,可能是新的)和QYrfla.nwafu-7BL.6(YrFLA.3,位于一个热点区域)。在所有环境中,YrFLA.3比YrFLA.1和YrFLA.2更有效,但这三个位点之间的协同相互作用导致抗性显著增强。在无锈条件下,千粒重几乎没有差异,但锈病圃的结果表明,与具有一个或多个QTL的RILs相比,缺乏这些QTL的RILs千粒重降低了21.81%-28.76%。另一方面,基于GenoBaits分析的一组679个当前中国品种和育种系被用来表征单倍型变异和这些位点的分布。具有YrFLA.1、YrFLA.2和YrFLA.3区域的单倍型频率分别为65.83%、18.99%和43.44%,病害严重程度降低了17.57%-37.54%。这些发现表明,有效的基因聚合策略对于培育高产和持久抗性品种至关重要。

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本文引用的文献

1
Pan-genome bridges wheat structural variations with habitat and breeding.泛基因组将小麦的结构变异与栖息地和育种联系起来。
Nature. 2025 Jan;637(8045):384-393. doi: 10.1038/s41586-024-08277-0. Epub 2024 Nov 27.
2
Yr29 combined with QYr.nwafu-4BL.3 confers durable resistance to stripe rust in wheat cultivar Jing 411.Yr29 与 QYr.nwafu-4BL.3 共同赋予小麦品种京 411 对条锈病的持久抗性。
Theor Appl Genet. 2024 Oct 19;137(11):252. doi: 10.1007/s00122-024-04758-y.
3
Development and application of the GenoBaits WheatSNP16K array to accelerate wheat genetic research and breeding.
GenoBaits小麦SNP16K芯片的开发与应用,以加速小麦遗传研究与育种
Plant Commun. 2025 Jan 13;6(1):101138. doi: 10.1016/j.xplc.2024.101138. Epub 2024 Sep 24.
4
Chromosome-level assembly of the synthetic hexaploid wheat-derived cultivar Chuanmai 104.合成六倍体小麦品种川麦 104 的染色体水平组装。
Sci Data. 2024 Jun 22;11(1):670. doi: 10.1038/s41597-024-03527-2.
5
High-density mapping of durable and broad-spectrum stripe rust resistance gene Yr30 in wheat.小麦持久广谱条锈病抗性基因 Yr30 的高密度图谱定位。
Theor Appl Genet. 2024 Jun 8;137(7):152. doi: 10.1007/s00122-024-04654-5.
6
A necessary considering factor for breeding: growth-defense tradeoff in plants.育种的一个必要考虑因素:植物的生长-防御权衡。
Stress Biol. 2023 Apr 6;3(1):6. doi: 10.1007/s44154-023-00086-1.
7
Slow stripe rusting in Chinese wheat Jimai 44 conferred by Yr29 in combination with a major QTL on chromosome arm 6AL.中国小麦品种济麦 44 中由 Yr29 与 6AL 染色体臂上的一个主效 QTL 共同引起的缓慢条锈病。
Theor Appl Genet. 2023 Jul 27;136(8):175. doi: 10.1007/s00122-023-04420-z.
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High density mapping of wheat stripe rust resistance gene QYrXN3517-1BL using QTL mapping, BSE-Seq and candidate gene analysis.利用QTL定位、BSE-Seq和候选基因分析对小麦条锈病抗性基因QYrXN3517-1BL进行高密度定位
Theor Appl Genet. 2023 Mar 10;136(3):39. doi: 10.1007/s00122-023-04282-5.
9
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Theor Appl Genet. 2022 Jul;135(7):2501-2513. doi: 10.1007/s00122-022-04133-9. Epub 2022 Jun 20.
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Enhanced stripe rust resistance obtained by combining Yr30 with a widely dispersed, consistent QTL on chromosome arm 4BL.通过将Yr30与位于4BL染色体臂上一个广泛分布且稳定的QTL相结合获得了增强的条锈病抗性。
Theor Appl Genet. 2022 Jan;135(1):351-365. doi: 10.1007/s00122-021-03970-4. Epub 2021 Oct 19.